Pre_GI: BLASTP Hits

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Query: NC_001263:1378605:1390186 Deinococcus radiodurans R1 chromosome 1, complete sequence

Start: 1390186, End: 1390776, Length: 591

Host Lineage: Deinococcus radiodurans; Deinococcus; Deinococcaceae; Deinococcales; Deinococcus-Thermus; Bacteria

General Information: This red-pigmented organism's name means "strange berry that withstands radiation", marking the fact that this organism is one of the most radiation-resistant known. It can tolerate radiation levels at 1000 times the levels that would kill a human and it was originally isolated in 1956 from a can of meat that had been irradiated with X-rays. The resistance to radiation may reflect its resistance to dessication, which also causes DNA damage. This organism may be of use in cleaning up toxic metals found at nuclear weapons production sites due to the radiation resistance. This bacterium is also a highly efficient transformer, and can readily take up exogenous DNA from the environment, which may also aid DNA repair. This organism carries multiple copies of many DNA repair genes, suggesting a robust system for dealing with DNA damage. The recombination system may rely on multiple copies of various repeat elements found throughout the genome.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008010:1:138201382014416597Deinococcus geothermalis DSM 11300 plasmid 1, complete sequencetranscriptional regulator, TetR family8e-1373.6
NC_001263:1378605:138624313862431386815573Deinococcus radiodurans R1 chromosome 1, complete sequencetranscriptional repressor, TetR family1e-1272.8
NC_011000:1262324:126468212646821265407726Burkholderia cenocepacia J2315 chromosome 1, complete sequenceTetR family regulatory protein7e-0857
NC_015422:3366500:336988733698873370549663Alicycliphilus denitrificans K601 chromosome, complete genomeTetR family transcriptional regulator8e-0857
NC_006177:2398482:242190624219062422553648Symbiobacterium thermophilum IAM 14863, complete genomeTetR family transcriptional regulator1e-0756.6
NC_017060:125480:162766162766163344579Rahnella aquatilis HX2 plasmid PRA1, complete sequenceTetR family transcriptional regulator1e-0756.2
NC_008825:1113060:111747611174761118156681Methylibium petroleiphilum PM1, complete genomeputative transcription regulator protein1e-0756.2
NC_013508:1491945:149494114949411495519579Edwardsiella tarda EIB202, complete genometranscriptional regulator, TetR family3e-0755.1
NC_017075:1674758:169781216978121698459648Rubrivivax gelatinosus IL144, complete genomeTetR family transcriptional regulator3e-0755.1
NC_003296:1461538:146352614635261464227702Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePUTATIVE TRANSCRIPTION REGULATOR PROTEIN4e-0754.7
NC_014318:8687448:8687448868744886886261179Amycolatopsis mediterranei U32 chromosome, complete genomeTetR family transcriptional regulator5e-0754.3
NC_017186:8683964:8687504868750486886821179Amycolatopsis mediterranei S699 chromosome, complete genomeTetR family transcriptional regulator5e-0754.3
NC_014246:611275:636808636808637455648Mobiluncus curtisii ATCC 43063 chromosome, complete genomeTetR family transcriptional regulator5e-0754.3
NC_014168:2575799:2599232259923226004761245Segniliparus rotundus DSM 44985 chromosome, complete genomeTetR family transcriptional regulator6e-0753.9
NC_011768:3385719:341889634188963419528633Desulfatibacillum alkenivorans AK-01, complete genometranscriptional regulator, TetR family7e-0753.5
NC_007510:1959883:197404719740471974766720Burkholderia sp. 383 chromosome 1, complete sequencetranscriptional regulator, TetR family8e-0753.5
NC_008699:2916752:293651429365142937146633Nocardioides sp. JS614, complete genomeregulatory protein, TetR9e-0753.5
NC_012691:2614603:268837726883772689009633Tolumonas auensis DSM 9187, complete genometranscriptional regulator, TetR family1e-0653.1
NC_016002:2453919:247043024704302471047618Pseudogulbenkiania sp. NH8B, complete genomeTetR family transcriptional regulator2e-0652.4
NC_006582:1017000:102269010226901023229540Bacillus clausii KSM-K16, complete genometranscriptional regulator2e-0652.4
NC_014500:2402881:242317224231722423798627Dickeya dadantii 3937 chromosome, complete genomeputative DNA-binding transcriptional regulatory family of the TetR family5e-0650.8