Pre_GI: OUP Neighbours

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Query: NC_006905:326517 Salmonella enterica subsp. enterica serovar Choleraesuis str

D: 37.465

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated from a 58-year old man with sepsis and has been shown to be resistant to ciprofloxacin and ceftriaxone. This organism also causes severe disease (swine paratyphoid) in pigs. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

Number of Neighbours: 163




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_013717:5726Citrobacter rodentium ICC168 plasmid pCROD1, complete sequence76.9792 %Subject Query25.079
CP002797:4656327Escherichia coli NA114, complete genome76.5288 %Subject Query26.8361
NC_011740:1991941*Escherichia fergusonii ATCC 35469, complete genome75.9222 %Subject ←→ Query27.7754
NC_010468:2406387*Escherichia coli ATCC 8739, complete genome77.6134 %Subject ←→ Query28.8424
CP002797:2472908Escherichia coli NA114, complete genome75.239 %Subject ←→ Query29.1859
NC_013956:2592378Pantoea ananatis LMG 20103 chromosome, complete genome75.9314 %Subject ←→ Query29.2346
NC_009800:2049346Escherichia coli HS, complete genome77.2335 %Subject ←→ Query29.8169
NC_003197:2720726Salmonella typhimurium LT2, complete genome77.7665 %Subject ←→ Query30.2164
NC_011750:527470*Escherichia coli IAI39 chromosome, complete genome82.3223 %Subject ←→ Query30.3958
NC_007613:1038000Shigella boydii Sb227, complete genome76.7524 %Subject ←→ Query30.5697
NC_004337:2035945Shigella flexneri 2a str. 301, complete genome75.6556 %Subject ←→ Query30.5778
NC_011740:4520373Escherichia fergusonii ATCC 35469, complete genome80.432 %Subject ←→ Query30.8156
NC_009800:349592*Escherichia coli HS, complete genome77.7604 %Subject ←→ Query30.8783
NC_012214:3502992Erwinia pyrifoliae Ep1/96, complete genome76.2745 %Subject ←→ Query30.9643
NC_002655:1103991Escherichia coli O157:H7 EDL933, complete genome77.2855 %Subject ←→ Query31.019
NC_011083:3171171*Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,75.3585 %Subject ←→ Query31.1395
NC_008563:1475500Escherichia coli APEC O1, complete genome76.7953 %Subject ←→ Query31.1618
NC_004088:1851500*Yersinia pestis KIM, complete genome75.9896 %Subject ←→ Query31.1816
NC_011080:2722492Salmonella enterica subsp. enterica serovar Newport str. SL254,77.9933 %Subject ←→ Query31.2403
NC_008563:2041345Escherichia coli APEC O1, complete genome79.7365 %Subject ←→ Query31.3432
AP010958:2455052*Escherichia coli O103:H2 str. 12009 DNA, complete genome78.5938 %Subject ←→ Query31.4202
NC_004431:3012668Escherichia coli CFT073, complete genome75.9743 %Subject ←→ Query31.4689
NC_013961:629307Erwinia amylovora, complete genome75.3309 %Subject ←→ Query31.6178
NC_011748:4792703*Escherichia coli 55989, complete genome75.8333 %Subject ←→ Query31.6938
CU928145:4792703*Escherichia coli 55989 chromosome, complete genome75.8333 %Subject ←→ Query31.6938
CP002797:2062006*Escherichia coli NA114, complete genome77.5521 %Subject ←→ Query31.7624
NC_009832:4564752Serratia proteamaculans 568, complete genome76.25 %Subject ←→ Query31.9338
CU928160:2715246*Escherichia coli IAI1 chromosome, complete genome77.4449 %Subject ←→ Query32.0586
NC_008253:3122148*Escherichia coli 536, complete genome80.8487 %Subject ←→ Query32.0871
NC_008563:4707826Escherichia coli APEC O1, complete genome75.3217 %Subject ←→ Query32.3018
NC_005810:3917254Yersinia pestis biovar Microtus str. 91001, complete genome75.1471 %Subject ←→ Query32.5203
NC_011750:3545466*Escherichia coli IAI39 chromosome, complete genome77.5398 %Subject ←→ Query32.5632
NC_004741:2009769Shigella flexneri 2a str. 2457T, complete genome76.8382 %Subject ←→ Query32.5875
NC_011750:1565000Escherichia coli IAI39 chromosome, complete genome77.5521 %Subject ←→ Query32.5916
NC_010498:4072681*Escherichia coli SMS-3-5, complete genome75.7567 %Subject ←→ Query32.6141
NC_008149:3556999*Yersinia pestis Nepal516, complete genome75.6832 %Subject ←→ Query32.6568
NC_011748:1773642*Escherichia coli 55989, complete genome80.4779 %Subject ←→ Query32.6605
CU928145:1773642*Escherichia coli 55989 chromosome, complete genome80.4779 %Subject ←→ Query32.6605
NC_009801:1756610Escherichia coli E24377A, complete genome75.6373 %Subject ←→ Query32.6826
NC_003198:4397074*Salmonella enterica subsp. enterica serovar Typhi str. CT18,78.5784 %Subject ←→ Query32.8186
AP010958:2134556*Escherichia coli O103:H2 str. 12009 DNA, complete genome80.049 %Subject ←→ Query32.8216
NC_011751:256830Escherichia coli UMN026 chromosome, complete genome79.7702 %Subject ←→ Query32.8338
NC_004088:2966331Yersinia pestis KIM, complete genome76.0539 %Subject ←→ Query32.8684
NC_004088:3689000*Yersinia pestis KIM, complete genome75.674 %Subject ←→ Query32.8803
NC_010694:3178842*Erwinia tasmaniensis, complete genome75.8517 %Subject ←→ Query32.9141
NC_003143:1059580*Yersinia pestis CO92, complete genome75.4289 %Subject ←→ Query32.9385
NC_010634:3720214*Yersinia pseudotuberculosis PB1/+, complete genome75.8027 %Subject ←→ Query33.0998
NC_004631:4381724Salmonella enterica subsp. enterica serovar Typhi Ty2, complete78.5846 %Subject ←→ Query33.1274
NC_013592:1668092*Dickeya dadantii Ech586, complete genome75.7966 %Subject ←→ Query33.1434
NC_011750:1978801Escherichia coli IAI39 chromosome, complete genome77.2059 %Subject ←→ Query33.1799
NC_007613:4403070Shigella boydii Sb227, complete genome76.829 %Subject ←→ Query33.2307
NC_004431:1713141Escherichia coli CFT073, complete genome75.7506 %Subject ←→ Query33.265
NC_011748:3958572Escherichia coli 55989, complete genome77.7053 %Subject ←→ Query33.3232
CU928145:3958572Escherichia coli 55989 chromosome, complete genome77.7053 %Subject ←→ Query33.3232
NC_008253:4817864Escherichia coli 536, complete genome75.9957 %Subject ←→ Query33.3548
NC_006155:3805640*Yersinia pseudotuberculosis IP 32953, complete genome75.3585 %Subject ←→ Query33.3679
NC_007946:4875997Escherichia coli UTI89, complete genome75.2911 %Subject ←→ Query33.512
NC_011750:4390000Escherichia coli IAI39 chromosome, complete genome77.3805 %Subject ←→ Query33.521
NC_004741:3041294*Shigella flexneri 2a str. 2457T, complete genome76.9393 %Subject ←→ Query33.6878
NC_008149:2802392Yersinia pestis Nepal516, complete genome75.0705 %Subject ←→ Query33.694
NC_010473:1712984*Escherichia coli str. K-12 substr. DH10B, complete genome75.2788 %Subject ←→ Query33.9207
NC_012962:1317602Photorhabdus asymbiotica, complete genome77.2763 %Subject ←→ Query33.955
NC_002655:919654Escherichia coli O157:H7 EDL933, complete genome77.2243 %Subject ←→ Query34.0811
NC_002695:2655445Escherichia coli O157:H7 str. Sakai, complete genome80.1685 %Subject ←→ Query34.1082
NC_014837:1873020*Pantoea sp. At-9b chromosome, complete genome75.2788 %Subject ←→ Query34.1637
NC_012691:241404Tolumonas auensis DSM 9187, complete genome75.386 %Subject ←→ Query34.1926
NC_010498:2278306Escherichia coli SMS-3-5, complete genome75.6495 %Subject ←→ Query34.2186
NC_011750:2928990*Escherichia coli IAI39 chromosome, complete genome76.3082 %Subject ←→ Query34.2283
NC_008253:334467*Escherichia coli 536, complete genome75.4473 %Subject ←→ Query34.2564
NC_002695:1929215*Escherichia coli O157:H7 str. Sakai, complete genome80.7016 %Subject ←→ Query34.3172
NC_007946:4779745Escherichia coli UTI89, complete genome76.1029 %Subject ←→ Query34.3298
NC_010658:1933605*Shigella boydii CDC 3083-94, complete genome76.6605 %Subject ←→ Query34.3978
NC_007941:11319Escherichia coli UTI89 plasmid pUTI89, complete sequence77.6256 %Subject ←→ Query34.4019
NC_008253:257059Escherichia coli 536, complete genome76.3051 %Subject ←→ Query34.548
NC_011083:338910Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,86.0294 %Subject ←→ Query34.6863
NC_008563:258725*Escherichia coli APEC O1, complete genome76.682 %Subject ←→ Query34.7956
NC_004431:324000Escherichia coli CFT073, complete genome78.6152 %Subject ←→ Query34.8012
NC_002655:2730659Escherichia coli O157:H7 EDL933, complete genome81.7616 %Subject ←→ Query34.8538
NC_012214:745302Erwinia pyrifoliae Ep1/96, complete genome76.6667 %Subject ←→ Query35.1441
NC_002695:261235Escherichia coli O157:H7 str. Sakai, complete genome77.8002 %Subject ←→ Query35.1562
NC_012962:2639500Photorhabdus asymbiotica, complete genome79.1881 %Subject ←→ Query35.2073
NC_002695:917509Escherichia coli O157:H7 str. Sakai, complete genome76.5196 %Subject ←→ Query35.2195
NC_008253:296500Escherichia coli 536, complete genome79.1483 %Subject ←→ Query35.2505
NC_007946:258747Escherichia coli UTI89, complete genome76.6605 %Subject ←→ Query35.3594
NC_012214:537000Erwinia pyrifoliae Ep1/96, complete genome75.4688 %Subject ←→ Query35.4761
NC_003197:332086Salmonella typhimurium LT2, complete genome84.8744 %Subject ←→ Query35.5758
NC_010488:48868Escherichia coli SMS-3-5 plasmid pSMS35_130, complete sequence75.0521 %Subject ←→ Query35.6499
NC_011750:4775770Escherichia coli IAI39 chromosome, complete genome79.1023 %Subject ←→ Query35.7604
NC_008563:1505405Escherichia coli APEC O1, complete genome78.5294 %Subject ←→ Query35.9085
NC_014228:3391500Xenorhabdus nematophila ATCC 19061, complete genome75.8548 %Subject ←→ Query35.9268
NC_008563:5011997Escherichia coli APEC O1, complete genome81.0662 %Subject ←→ Query35.9385
CU928160:1668842Escherichia coli IAI1 chromosome, complete genome78.7469 %Subject ←→ Query35.948
NC_004431:3040953Escherichia coli CFT073, complete genome78.557 %Subject ←→ Query35.9589
NC_002695:1794635Escherichia coli O157:H7 str. Sakai, complete genome77.6808 %Subject ←→ Query35.9924
NC_011149:1110642Salmonella enterica subsp. enterica serovar Agona str. SL483,78.3119 %Subject ←→ Query36.0132
NC_004431:4955658*Escherichia coli CFT073, complete genome75.4504 %Subject ←→ Query36.0161
NC_011083:4547825Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,76.8689 %Subject ←→ Query36.0169
NC_003198:331314Salmonella enterica subsp. enterica serovar Typhi str. CT18,91.204 %Subject ←→ Query36.1232
NC_007384:278810Shigella sonnei Ss046, complete genome76.538 %Subject ←→ Query36.1625
NC_011751:1859606Escherichia coli UMN026 chromosome, complete genome77.261 %Subject ←→ Query36.2006
NC_010102:931055Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,82.1324 %Subject ←→ Query36.259
NC_010067:2488141Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete77.258 %Subject ←→ Query36.336
NC_009787:17344Escherichia coli E24377A plasmid pETEC_35, complete sequence79.5925 %Subject ←→ Query36.3795
NC_011080:4543000Salmonella enterica subsp. enterica serovar Newport str. SL254,80.527 %Subject ←→ Query36.4002
CP002185:1770815Escherichia coli W, complete genome78.7224 %Subject ←→ Query36.4965
NC_009800:1657550Escherichia coli HS, complete genome77.9504 %Subject ←→ Query36.5371
NC_010102:4477836Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,77.9075 %Subject ←→ Query36.5459
NC_004631:2615908Salmonella enterica subsp. enterica serovar Typhi Ty2, complete84.4485 %Subject ←→ Query36.5722
NC_005126:4919689Photorhabdus luminescens subsp. laumondii TTO1, complete genome77.7972 %Subject ←→ Query36.7305
NC_012962:4427000Photorhabdus asymbiotica, complete genome80.2788 %Subject ←→ Query36.7533
NC_007712:1262593Sodalis glossinidius str. 'morsitans', complete genome75.2696 %Subject ←→ Query36.9896
CP002797:4775780Escherichia coli NA114, complete genome80.2941 %Subject ←→ Query37.0319
NC_011751:1446073Escherichia coli UMN026 chromosome, complete genome75.8609 %Subject ←→ Query37.0661
NC_015663:4488058Enterobacter aerogenes KCTC 2190 chromosome, complete genome75.2022 %Subject ←→ Query37.0766
NC_006511:2540500Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC83.799 %Subject ←→ Query37.0863
NC_004431:1211000*Escherichia coli CFT073, complete genome77.212 %Subject ←→ Query37.0893
AP010958:867869Escherichia coli O103:H2 str. 12009 DNA, complete genome78.9767 %Subject ←→ Query37.1297
NC_004431:1166568Escherichia coli CFT073, complete genome77.2089 %Subject ←→ Query37.2232
NC_011749:34056*Escherichia coli UMN026 plasmid p1ESCUM, complete sequence78.7194 %Subject ←→ Query37.2365
NC_004431:3409389*Escherichia coli CFT073, complete genome79.3781 %Subject ←→ Query37.4762
NC_002695:1364833Escherichia coli O157:H7 str. Sakai, complete genome75.0123 %Subject ←→ Query37.7023
NC_011751:3453683Escherichia coli UMN026 chromosome, complete genome81.7524 %Subject ←→ Query37.7715
NC_008253:3161311Escherichia coli 536, complete genome78.0086 %Subject ←→ Query37.787
NC_002655:1053082Escherichia coli O157:H7 EDL933, complete genome76.3787 %Subject ←→ Query37.8144
NC_007946:1119000*Escherichia coli UTI89, complete genome77.7114 %Subject ←→ Query37.8204
NC_002655:261236Escherichia coli O157:H7 EDL933, complete genome77.4694 %Subject ←→ Query37.8411
AP010958:3853082*Escherichia coli O103:H2 str. 12009 DNA, complete genome76.8719 %Subject ←→ Query37.9582
NC_009778:259241*Enterobacter sakazakii ATCC BAA-894, complete genome75.2237 %Subject ←→ Query38.1682
AP010958:2272919Escherichia coli O103:H2 str. 12009 DNA, complete genome82.6838 %Subject ←→ Query38.2003
NC_010102:1779707Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,79.5496 %Subject ←→ Query38.4493
NC_011149:309556Salmonella enterica subsp. enterica serovar Agona str. SL483,80.7874 %Subject ←→ Query38.5236
NC_012962:3499900Photorhabdus asymbiotica, complete genome76.4154 %Subject ←→ Query38.7985
NC_011083:2542876Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,76.5227 %Subject ←→ Query38.8327
NC_015968:4790239*Enterobacter asburiae LF7a chromosome, complete genome75.2665 %Subject ←→ Query39.0017
NC_006905:1342474Salmonella enterica subsp. enterica serovar Choleraesuis str77.0282 %Subject ←→ Query39.1912
NC_004431:279868Escherichia coli CFT073, complete genome80.0337 %Subject ←→ Query39.5292
NC_010554:2872000Proteus mirabilis HI4320, complete genome76.3388 %Subject ←→ Query40.1143
NC_009832:426993*Serratia proteamaculans 568, complete genome75.7108 %Subject ←→ Query40.3702
NC_004631:1182883*Salmonella enterica subsp. enterica serovar Typhi Ty2, complete75.1654 %Subject ←→ Query40.7346
NC_002128:35000Escherichia coli O157:H7 str. Sakai plasmid pO157, complete80.7108 %Subject ←→ Query41.037
NC_002695:1571389Escherichia coli O157:H7 str. Sakai, complete genome79.7243 %Subject ←→ Query41.3174
NC_002655:1655944Escherichia coli O157:H7 EDL933, complete genome79.1452 %Subject ←→ Query41.582
NC_011080:333121Salmonella enterica subsp. enterica serovar Newport str. SL254,85.6495 %Subject ←→ Query41.7628
NC_007414:56508Escherichia coli O157:H7 EDL933 plasmid pO157, complete sequence82.0006 %Subject ←→ Query42.1367
NC_015567:346500Serratia sp. AS9 chromosome, complete genome75.5147 %Subject ←→ Query42.2995
NC_009790:42112Escherichia coli E24377A plasmid pETEC_74, complete sequence76.3174 %Subject ←→ Query42.3754
NC_010067:3310336Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete75.2175 %Subject ←→ Query42.4515
NC_013716:1178383*Citrobacter rodentium ICC168, complete genome77.5184 %Subject ←→ Query42.529
NC_013716:5201097*Citrobacter rodentium ICC168, complete genome81.0355 %Subject ←→ Query42.6129
NC_014228:3505320Xenorhabdus nematophila ATCC 19061, complete genome77.3713 %Subject ←→ Query42.6617
AP010958:1305712Escherichia coli O103:H2 str. 12009 DNA, complete genome81.5257 %Subject ←→ Query42.7374
NC_011748:3360967*Escherichia coli 55989, complete genome75.1471 %Subject ←→ Query42.7659
CU928145:3360967*Escherichia coli 55989 chromosome, complete genome75.1471 %Subject ←→ Query42.7659
NC_003197:776238Salmonella typhimurium LT2, complete genome76.2163 %Subject ←→ Query42.7891
NC_011080:780850Salmonella enterica subsp. enterica serovar Newport str. SL254,76.1826 %Subject ←→ Query43.0958
NC_013716:1138441*Citrobacter rodentium ICC168, complete genome75.337 %Subject ←→ Query43.1029
NC_003198:751779Salmonella enterica subsp. enterica serovar Typhi str. CT18,75.8854 %Subject ←→ Query43.7973
NC_011083:824659Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,76.2316 %Subject ←→ Query43.8662
NC_015566:345084Serratia sp. AS12 chromosome, complete genome75.6801 %Subject ←→ Query43.9354
NC_010554:2789722*Proteus mirabilis HI4320, complete genome82.7237 %Subject ←→ Query44.5754
NC_004851:191709Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence78.9185 %Subject ←→ Query44.8472
NC_013716:4306695*Citrobacter rodentium ICC168, complete genome78.125 %Subject ←→ Query44.9938
NC_014121:1589389*Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete75.288 %Subject Query50.627