Pre_GI: OUP Neighbours

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Query: NC_014334:1848340 Lactobacillus casei str. Zhang chromosome, complete genome

D: 27.6265

Host Lineage: Lactobacillus casei; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Lactobacillus casei str. Zhang was isolated from traditional home-made koumiss (fermented mare's milk) in Inner Mongolia, China. This strain has the potential probiotic properties such as high resistance to acidic pH and bile salt. They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, fermented milks, and other products, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully created, cultivated, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus casei is used as a starter culture during milk fermentation and for the flavor development of certain bacterial-ripened cheeses.

Number of Neighbours: 35




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_010999:2516000Lactobacillus casei, complete genome82.8738 %Subject ←→ Query27.1158
NC_015731:2400526*Nitrosomonas sp. Is79A3 chromosome, complete genome76.3603 %Subject ←→ Query27.4684
NC_015731:169989Nitrosomonas sp. Is79A3 chromosome, complete genome75.8333 %Subject ←→ Query27.6873
NC_015222:1749553*Nitrosomonas sp. AL212 chromosome, complete genome77.6654 %Subject ←→ Query27.7237
NC_010999:2450974*Lactobacillus casei, complete genome83.6121 %Subject ←→ Query28.2344
NC_009138:668000Herminiimonas arsenicoxydans, complete genome75.2757 %Subject ←→ Query28.6266
NC_008526:74500*Lactobacillus casei ATCC 334, complete genome84.2892 %Subject ←→ Query28.9383
NC_015222:1607757Nitrosomonas sp. AL212 chromosome, complete genome75.6005 %Subject ←→ Query29.1095
NC_014334:99000*Lactobacillus casei str. Zhang chromosome, complete genome82.5 %Subject ←→ Query29.7551
NC_013422:991500*Halothiobacillus neapolitanus c2, complete genome75.0888 %Subject ←→ Query30.9399
NC_011740:2072173Escherichia fergusonii ATCC 35469, complete genome75.962 %Subject ←→ Query31.0351
NC_013198:511795Lactobacillus rhamnosus GG, complete genome78.5325 %Subject ←→ Query31.25
NC_015731:447411Nitrosomonas sp. Is79A3 chromosome, complete genome75.2696 %Subject ←→ Query31.3594
NC_013199:1966334*Lactobacillus rhamnosus Lc 705, complete genome85.4963 %Subject ←→ Query31.9404
NC_014334:589526Lactobacillus casei str. Zhang chromosome, complete genome82.9749 %Subject ←→ Query32.7578
NC_010999:252605Lactobacillus casei, complete genome78.6458 %Subject ←→ Query32.847
NC_010498:4856011Escherichia coli SMS-3-5, complete genome75.6526 %Subject ←→ Query33.1043
NC_015572:1Methylomonas methanica MC09 chromosome, complete genome79.6998 %Subject ←→ Query34.0009
NC_011748:2655989*Escherichia coli 55989, complete genome75.8578 %Subject ←→ Query34.5105
CU928145:2655989*Escherichia coli 55989 chromosome, complete genome75.8578 %Subject ←→ Query34.5105
NC_008526:250000*Lactobacillus casei ATCC 334, complete genome77.3989 %Subject ←→ Query35.0097
NC_014334:267409*Lactobacillus casei str. Zhang chromosome, complete genome79.1973 %Subject ←→ Query35.3356
NC_010554:2646806Proteus mirabilis HI4320, complete genome79.133 %Subject ←→ Query35.3988
NC_008526:1822000*Lactobacillus casei ATCC 334, complete genome79.7304 %Subject ←→ Query35.8686
NC_010999:1979989*Lactobacillus casei, complete genome80.3707 %Subject ←→ Query36.6636
NC_012691:779826*Tolumonas auensis DSM 9187, complete genome76.2316 %Subject ←→ Query36.9103
NC_014334:1775781*Lactobacillus casei str. Zhang chromosome, complete genome80.6036 %Subject ←→ Query36.9239
NC_014010:1850500Candidatus Puniceispirillum marinum IMCC1322 chromosome, complete76.5656 %Subject ←→ Query36.9283
NC_015572:4916430Methylomonas methanica MC09 chromosome, complete genome78.1556 %Subject Query37.6362
NC_013730:2359939Spirosoma linguale DSM 74, complete genome76.0355 %Subject Query38.4788
NC_012691:2146473Tolumonas auensis DSM 9187, complete genome75.6893 %Subject Query38.7833
NC_014334:769205*Lactobacillus casei str. Zhang chromosome, complete genome78.8879 %Subject Query39.1896
NC_009801:1392696Escherichia coli E24377A, complete genome75.4749 %Subject Query40.1617
NC_008573:195317Shewanella sp. ANA-3 plasmid 1, complete sequence76.3787 %Subject Query46.5154
NC_010611:240839Acinetobacter baumannii ACICU, complete genome76.4798 %Subject Query48.2217