Pre_GI: OUP Neighbours

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Query: NC_010610:1649500 Lactobacillus fermentum IFO 3956, complete genome

D: 39.2201

Host Lineage: Lactobacillus fermentum; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. This probiotic species has been associated with active caries lesions.

Number of Neighbours: 18




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_015428:193817Lactobacillus buchneri NRRL B-30929 chromosome, complete genome75.3983 %Subject Query22.7687
NC_015697:116000*Lactobacillus reuteri SD2112 chromosome, complete genome77.4173 %Subject Query22.793
NC_015697:256000*Lactobacillus reuteri SD2112 chromosome, complete genome75.6985 %Subject Query23.2612
NC_010080:1885677Lactobacillus helveticus DPC 4571, complete genome75.1317 %Subject Query25.9241
NC_010080:1911932Lactobacillus helveticus DPC 4571, complete genome76.9822 %Subject Query25.9336
NC_008497:1575884*Lactobacillus brevis ATCC 367, complete genome76.0539 %Subject Query26.8361
NC_015214:1458480Lactobacillus acidophilus 30SC chromosome, complete genome76.9822 %Subject ←→ Query31.0242
NC_015697:742500*Lactobacillus reuteri SD2112 chromosome, complete genome75.3431 %Subject ←→ Query31.0853
NC_008529:1133665Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, complete78.0729 %Subject ←→ Query31.098
NC_015602:1949610Lactobacillus kefiranofaciens ZW3 chromosome, complete genome75.5086 %Subject ←→ Query31.6209
NC_008054:1117703*Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete76.2377 %Subject ←→ Query31.8215
NC_014727:889132Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,77.4908 %Subject ←→ Query32.2258
NC_008054:201075*Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete78.0362 %Subject ←→ Query34.2781
NC_010610:861194Lactobacillus fermentum IFO 3956, complete genome76.3909 %Subject ←→ Query36.7806
NC_008529:1514000*Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, complete75.7353 %Subject ←→ Query37.5832
NC_010610:755000*Lactobacillus fermentum IFO 3956, complete genome77.5643 %Subject ←→ Query39.2062
NC_010610:2013659Lactobacillus fermentum IFO 3956, complete genome80.913 %Subject ←→ Query43.0803
NC_010610:1580483*Lactobacillus fermentum IFO 3956, complete genome76.0754 %Subject ←→ Query44.2348