Pre_GI: OUP Neighbours

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Query: NC_010102:2881714 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,

D: 32.0373

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (SGSC 4150; ATCC BAA-1250) was isolated from a stool sample of an infected woman in Penang, Malaysia, May 16, 2002. This strain is susceptible to antibiotics, and was classified as serovar Paratyphi B because it was unable to metabolize D-tartrate. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

Number of Neighbours: 69




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_012880:2480000Dickeya dadantii Ech703, complete genome75.579 %Subject ←→ Query30.1678
NC_012880:913698Dickeya dadantii Ech703, complete genome75.7659 %Subject ←→ Query30.49
NC_015663:1934863Enterobacter aerogenes KCTC 2190 chromosome, complete genome77.7053 %Subject ←→ Query30.6937
NC_015968:4389871Enterobacter asburiae LF7a chromosome, complete genome75.2727 %Subject ←→ Query30.7332
NC_004631:2755306Salmonella enterica subsp. enterica serovar Typhi Ty2, complete93.3915 %Subject ←→ Query30.7575
NC_013282:646569Cronobacter turicensis, complete genome79.6048 %Subject ←→ Query30.8062
NC_003198:2769449Salmonella enterica subsp. enterica serovar Typhi str. CT18,93.3915 %Subject ←→ Query31.0494
NC_012912:2800884*Dickeya zeae Ech1591, complete genome75.481 %Subject ←→ Query31.095
NC_006511:3759550Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC77.6961 %Subject ←→ Query31.1345
NC_011149:3895921Salmonella enterica subsp. enterica serovar Agona str. SL483,77.0129 %Subject ←→ Query31.5601
NC_010067:171053Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete87.4265 %Subject ←→ Query31.5722
NC_015663:4447984Enterobacter aerogenes KCTC 2190 chromosome, complete genome79.1759 %Subject ←→ Query31.6444
NC_004631:283289*Salmonella enterica subsp. enterica serovar Typhi Ty2, complete77.0067 %Subject ←→ Query31.6756
NC_013282:3719500*Cronobacter turicensis, complete genome80.9222 %Subject ←→ Query31.6817
NC_004631:3841975Salmonella enterica subsp. enterica serovar Typhi Ty2, complete76.6238 %Subject ←→ Query32.0647
NC_010102:3919999Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,78.0423 %Subject ←→ Query32.0708
NC_003197:3971905Salmonella typhimurium LT2, complete genome77.4449 %Subject ←→ Query32.0829
NC_014500:3519722Dickeya dadantii 3937 chromosome, complete genome77.7543 %Subject ←→ Query32.164
NC_012912:1229333Dickeya zeae Ech1591, complete genome76.4767 %Subject ←→ Query32.2592
NC_007712:1893066*Sodalis glossinidius str. 'morsitans', complete genome75.3278 %Subject ←→ Query32.276
NC_011083:3985618Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,77.1844 %Subject ←→ Query32.4599
NC_003198:3855157Salmonella enterica subsp. enterica serovar Typhi str. CT18,76.6146 %Subject ←→ Query32.5632
NC_012917:4646491Pectobacterium carotovorum subsp. carotovorum PC1, complete genome75.046 %Subject ←→ Query32.6958
NC_012880:3645304Dickeya dadantii Ech703, complete genome75.2482 %Subject ←→ Query33.3293
NC_013716:1756545*Citrobacter rodentium ICC168, complete genome81.9853 %Subject ←→ Query33.4286
NC_010102:283364*Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,79.0962 %Subject ←→ Query33.8947
NC_012912:777592*Dickeya zeae Ech1591, complete genome78.2138 %Subject ←→ Query33.9737
NC_009778:1902995Enterobacter sakazakii ATCC BAA-894, complete genome78.7194 %Subject ←→ Query35.1593
NC_003198:3824187Salmonella enterica subsp. enterica serovar Typhi str. CT18,79.1605 %Subject ←→ Query35.4207
NC_010694:614985Erwinia tasmaniensis, complete genome78.318 %Subject ←→ Query35.5876
NC_010067:3753971Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete79.5711 %Subject ←→ Query35.7065
NC_006905:3942753Salmonella enterica subsp. enterica serovar Choleraesuis str81.4737 %Subject ←→ Query35.749
NC_010067:632683Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete78.2322 %Subject ←→ Query35.8098
NC_012779:2424967*Edwardsiella ictaluri 93-146, complete genome75.8578 %Subject ←→ Query35.992
NC_004631:3809678Salmonella enterica subsp. enterica serovar Typhi Ty2, complete79.1238 %Subject ←→ Query36.1376
NC_006511:682863*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC77.6899 %Subject ←→ Query36.3874
NC_003197:4005857Salmonella typhimurium LT2, complete genome79.7059 %Subject ←→ Query36.3904
NC_011080:2789744*Salmonella enterica subsp. enterica serovar Newport str. SL254,77.7665 %Subject ←→ Query36.512
NC_011080:3976441Salmonella enterica subsp. enterica serovar Newport str. SL254,79.902 %Subject ←→ Query36.5166
NC_012880:2778795Dickeya dadantii Ech703, complete genome78.1893 %Subject ←→ Query36.5333
NC_011149:361765Salmonella enterica subsp. enterica serovar Agona str. SL483,82.7819 %Subject ←→ Query36.5643
NC_004547:138500Erwinia carotovora subsp. atroseptica SCRI1043, complete genome75.53 %Subject ←→ Query36.6454
NC_009778:3454790Enterobacter sakazakii ATCC BAA-894, complete genome82.1048 %Subject ←→ Query36.7583
NC_011080:383441Salmonella enterica subsp. enterica serovar Newport str. SL254,82.2549 %Subject ←→ Query37.0114
NC_008150:1420825*Yersinia pestis Antiqua, complete genome78.0331 %Subject ←→ Query37.0184
NC_005810:1794490*Yersinia pestis biovar Microtus str. 91001, complete genome77.9534 %Subject ←→ Query37.035
NC_007712:433500Sodalis glossinidius str. 'morsitans', complete genome75.4841 %Subject ←→ Query37.0845
NC_010102:3955479Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,80.0888 %Subject ←→ Query37.2943
NC_003143:2137945*Yersinia pestis CO92, complete genome78.1066 %Subject ←→ Query37.3318
NC_006511:3794017Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC78.4191 %Subject ←→ Query37.3602
NC_014500:2934232*Dickeya dadantii 3937 chromosome, complete genome77.2917 %Subject ←→ Query37.5286
NC_011083:4020000Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,79.7947 %Subject ←→ Query37.6885
NC_012912:647369Dickeya zeae Ech1591, complete genome77.0527 %Subject ←→ Query37.7391
NC_014500:894136Dickeya dadantii 3937 chromosome, complete genome75.2145 %Subject ←→ Query37.8586
NC_011149:2040396Salmonella enterica subsp. enterica serovar Agona str. SL483,77.6654 %Subject ←→ Query37.9381
NC_014500:1646854*Dickeya dadantii 3937 chromosome, complete genome78.0576 %Subject ←→ Query37.9513
NC_011149:2294500Salmonella enterica subsp. enterica serovar Agona str. SL483,76.4614 %Subject ←→ Query38.0253
NC_011149:3930358Salmonella enterica subsp. enterica serovar Agona str. SL483,79.3934 %Subject ←→ Query38.0507
NC_003198:2703013*Salmonella enterica subsp. enterica serovar Typhi str. CT18,77.2273 %Subject ←→ Query38.1505
NC_013716:4824541*Citrobacter rodentium ICC168, complete genome75.527 %Subject ←→ Query38.2235
NC_006511:3364448*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC79.2463 %Subject ←→ Query38.4606
NC_013282:1256769Cronobacter turicensis, complete genome80.962 %Subject ←→ Query38.8742
NC_011080:3941909Salmonella enterica subsp. enterica serovar Newport str. SL254,77.4449 %Subject ←→ Query39.4334
NC_006905:2805877*Salmonella enterica subsp. enterica serovar Choleraesuis str78.1311 %Subject ←→ Query39.786
NC_015663:770485*Enterobacter aerogenes KCTC 2190 chromosome, complete genome76.538 %Subject ←→ Query39.8332
NC_013282:3216226*Cronobacter turicensis, complete genome78.6581 %Subject ←→ Query41.2788
NC_013508:2130681*Edwardsiella tarda EIB202, complete genome76.8536 %Subject Query42.2435
NC_009648:293052*Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome81.9822 %Subject Query43.5401
NC_009778:1141716Enterobacter sakazakii ATCC BAA-894, complete genome76.3572 %Subject Query48.5924