Pre_GI: OUP Neighbours

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Query: NC_009012:2806000 Clostridium thermocellum ATCC 27405, complete genome

D: 33.4083

Host Lineage: Clostridium thermocellum; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a well studied producer of endoglucanase and several restriction endonucleases. Thermophilic cellulose degrading bacterium. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a thermophilic anaerobe that produces an extracellular enzyme system capable of degrading crystalline cellulose to soluble sugars that are further utilized as the carbon source for growth.

Number of Neighbours: 13




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NS_000191:120700*Uncultured Termite group 1 bacterium phylotype Rs-D17, complete77.3009 %Subject ←→ Query28.2201
NC_009012:1663357Clostridium thermocellum ATCC 27405, complete genome79.3413 %Subject ←→ Query29.2515
NC_015160:2521849*Odoribacter splanchnicus DSM 20712 chromosome, complete genome75.2574 %Subject ←→ Query29.9763
NC_013895:1429023*Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, complete75.7169 %Subject ←→ Query31.3351
NC_015703:1898159*Runella slithyformis DSM 19594 chromosome, complete genome75.3554 %Subject ←→ Query31.5135
NC_014376:1842290*Clostridium saccharolyticum WM1 chromosome, complete genome75.432 %Subject ←→ Query31.9269
NC_009012:75000*Clostridium thermocellum ATCC 27405, complete genome81.5809 %Subject ←→ Query32.8915
NC_014833:2855543*Ruminococcus albus 7 chromosome, complete genome75.3983 %Subject ←→ Query32.9229
NC_012781:2148478*Eubacterium rectale ATCC 33656, complete genome75.6893 %Subject ←→ Query33.5846
NC_014376:6296*Clostridium saccharolyticum WM1 chromosome, complete genome75.9344 %Subject ←→ Query34.8908
NC_015160:1467445*Odoribacter splanchnicus DSM 20712 chromosome, complete genome77.6562 %Subject ←→ Query34.9147
NC_015520:2612767Mahella australiensis 50-1 BON chromosome, complete genome75.4442 %Subject ←→ Query35.4815
NC_013216:3061491Desulfotomaculum acetoxidans DSM 771, complete genome75.5208 %Subject ←→ Query36.3661