Pre_GI: OUP Neighbours

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Query: NC_007793:1451409 Staphylococcus aureus subsp. aureus USA300, complete genome

D: 28.476

Host Lineage: Staphylococcus aureus; Staphylococcus; Staphylococcaceae; Bacillales; Firmicutes; Bacteria

General Information: USA300, a methicillin resistant strain of Staphylococcus aureus, has been implicated in epidemiologically unassociated outbreaks of skin and soft tissue infections among healthy individuals in at least 21 U.S. states, Canada and Europe. USA300 is also noted for its strong association with unusually invasive disease, including severe septicemia, necrotizing pneumonia and necrotizing fasciitis. Staphylcocci are generally found inhabiting the skin and mucous membranes of mammals and birds. Some members of this genus can be found as human commensals and these are generally believed to have the greatest pathogenic potential in opportunistic infections. This organism is a major cause of nosocomial (hospital-acquired) and community-acquired infections. S. aureus continues to be a major cause of mortality and is responsible for a variety of infections including, boils, furuncles, styes, impetigo and other superficial skin infections in humans. Also known to cause more serious infections particularly in the chronically ill or immunocompromised. The ability to cause invasive disease is associated with persistance in the nasal cavity of a host.

Number of Neighbours: 10




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_003210:721824Listeria monocytogenes EGD-e, complete genome75.9835 %Subject ←→ Query22.1346
NC_013893:359842Staphylococcus lugdunensis HKU09-01 chromosome, complete genome78.8848 %Subject ←→ Query24.2742
NC_012121:2218500Staphylococcus carnosus subsp. carnosus TM300, complete genome77.5429 %Subject ←→ Query25.2447
NC_002758:1508996Staphylococcus aureus subsp. aureus Mu50, complete genome97.5888 %Subject ←→ Query28.8616
NC_002951:1474465Staphylococcus aureus subsp. aureus COL, complete genome98.5723 %Subject ←→ Query29.1376
NC_002952:1497785Staphylococcus aureus subsp. aureus MRSA252, complete genome96.1826 %Subject ←→ Query29.2682
NC_002745:1432585Staphylococcus aureus subsp. aureus N315, complete genome97.644 %Subject ←→ Query29.4273
NC_009782:1510396Staphylococcus aureus subsp. aureus Mu3, complete genome97.5245 %Subject ←→ Query29.4968
NC_013520:91961*Veillonella parvula DSM 2008, complete genome77.3928 %Subject ←→ Query32.6686
NC_015460:1687684*Gallibacterium anatis UMN179 chromosome, complete genome78.0545 %Subject ←→ Query33.257