Pre_GI: OUP Neighbours

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Query: NC_006856:26438 Salmonella enterica subsp. enterica serovar Choleraesuis str

D: 47.2203

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated from a 58-year old man with sepsis and has been shown to be resistant to ciprofloxacin and ceftriaxone. This organism also causes severe disease (swine paratyphoid) in pigs. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

Number of Neighbours: 18




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_013119:1932402*Brucella microti CCM 4915 chromosome 1, complete sequence75.3002 %Subject Query29.7767
NC_017244:1941974*Brucella melitensis M28 chromosome chromosome 1, complete sequence75.3676 %Subject Query29.9373
NC_017246:1942293*Brucella melitensis M5-90 chromosome chromosome I, complete75.3768 %Subject Query30.7581
NC_015731:25493*Nitrosomonas sp. Is79A3 chromosome, complete genome75.2114 %Subject Query31.2014
NC_015572:2186394Methylomonas methanica MC09 chromosome, complete genome77.4571 %Subject Query33.1331
NC_016112:364723Methylomicrobium alcaliphilum chromosome, complete genome76.3664 %Subject Query34.0306
NC_009659:1923925Janthinobacterium sp. Marseille chromosome, complete genome76.9424 %Subject Query34.8963
NC_009659:2849000*Janthinobacterium sp. Marseille chromosome, complete genome78.6029 %Subject Query35.202
NC_009659:3384997Janthinobacterium sp. Marseille chromosome, complete genome76.5901 %Subject ←→ Query44.5909