Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_019968: Prevotella dentalis DSM 3688 chromosome 2, complete sequence

NCBI: NC_019968

Host Lineage: Prevotella dentalis; Prevotella; Prevotellaceae; Bacteroidales; Bacteroidetes; Bacteria

General Information: Environment: Host, Human oral microflora; Isolation: Human dental root canal; Temp: Mesophile; Temp: 37C. This organism is an member of the human oral microbial community that has been isolated in association with infections of the dental root canal.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
18397*3417325777Island text3.029153.967838.328BLASTN8397.gbk
2175480*19947123992Island text4.6063257.373419.235BLASTN175480.gbk
3382991*45725074260Island text4.1688953.213529.1937Neighbours312BLASTN+382991.gbk
455244057659924160Island text3.6385455.136223.2976BLASTN552440.gbk
589190491948627583Island text3.1864151.174624.4399BLASTN891904.gbk
61084288*113090746620Island text3.9033156.306321.0743Neighbours312BLASTN+1084288.gbk
71147409*117360926201Island text3.9534151.409423.8087Neighbours312BLASTN+1147409.gbk
81194489*123057836090Island text5.2847859.056917.7507Neighbours312BLASTN+1194489.gbk
91235500127809242593Island text3.9331854.391326.6917Neighbours312BLASTN+1235500.gbk
101304450*134324538796Island text4.5229758.532519.4897Neighbours312BLASTN+1304450.gbk
111387352141268625335Island text2.9436950.390331.7886BLASTN1387352.gbk