Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_019897: Thermobacillus composti KWC4 chromosome, complete genome

NCBI: NC_019897

Host Lineage: Thermobacillus composti; Thermobacillus; Paenibacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Isolation: composting reactor; Temp: Thermophile; Temp: 50C. Thermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4) is an aerobic, rod-shaped, spore-forming and moderately thermophilic Gram-negative bacterium isolated from a fed-batch composting reactor.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
17395712749553539Island text1.9274632.237622.4915Neighbours315BLASTN+73957.gbk
2128610*20195773348Island text1.7759530.756826.6817Neighbours11BLASTN+128610.gbk
320952323439624874Island text1.5913628.611426.477Neighbours11BLASTN+209523.gbk
4329945*37695547011Island text2.0362329.608127.2987Neighbours315BLASTN+329945.gbk
5700332*75137051039Island text1.8210727.251327.4228Neighbours116BLASTN+700332.gbk
6763412*79306429653Island text2.0347732.826822.547Neighbours315BLASTN+763412.gbk
790518592958524401Island text1.9204230.859437.2357Neighbours114BLASTN+905185.gbk
8938921*96659927679Island text1.8161133.140728.6835Neighbours31BLASTN+938921.gbk
91224798*126609941302Island text1.5843228.408725.5197Neighbours19BLASTN+1224798.gbk
101412496143699424499Island text1.8711529.979318.1163BLASTN+1412496.gbk
111577015*161988642872Island text2.0626227.557631.9486Neighbours11BLASTN+1577015.gbk
122004050*203289428845Island text2.5574137.86617.4102Neighbours116BLASTN+2004050.gbk
132645404266450019097Island text1.9523125.790432.7689Neighbours116BLASTN2645404.gbk
142696587272049823912Island text1.4462827.298220.3374Neighbours11BLASTN+2696587.gbk
152908971*294117632206Island text5.7011354.13924.7825Neighbours315BLASTN+2908971.gbk
162959002297991120910Island text1.4613227.401514.6303Neighbours315BLASTN+2959002.gbk
173025871*304870622836Island text2.0021926.279840.9733Neighbours11BLASTN+3025871.gbk
183057000*308251925520Island text1.8731633.153726.2545Neighbours11BLASTN+3057000.gbk
193251639*329389042252Island text1.8471834.492630.6136BLASTN+3251639.gbk
203467618349341225795Island text1.9958932.517122.7032Neighbours116BLASTN+3467618.gbk
213613830363877624947Island text1.3350426.690226.7877BLASTN+3613830.gbk
223669888369684126954Island text1.5727526.413525.5573Neighbours11BLASTN+3669888.gbk
233810000*386600956010Island text1.9076235.615319.2995Neighbours315BLASTN+3810000.gbk
244014485*406820053716Island text2.3211635.964826.0832Neighbours315BLASTN+4014485.gbk
254131337414984518509Island text1.5383525.294926.6232Neighbours319BLASTN+4131337.gbk