Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_019791: Caldisphaera lagunensis DSM 15908 chromosome, complete genome

NCBI: NC_019791

Host Lineage: Caldisphaera lagunensis; Caldisphaera; Caldisphaeraceae; Acidilobales; Crenarchaeota; Archaea

General Information: Country: Phillipines; Environment: Fresh water, Hot spring; Isolation: An acidic hot spring; Temp: Hyperthermophile; Temp: 75C.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
19979311886219070Island text1.9004914.427323.8945Neighbours21BLASTN99793.gbk
257092359409923177Island text2.5249114.302715.0688Neighbours21BLASTN+570923.gbk
3638500*66467726178Island text1.6835214.632125.5158Neighbours21BLASTN638500.gbk
41154816*117660021785Island text2.6038415.950930.0883Neighbours21BLASTN1154816.gbk
51189908*121234522438Island text1.7215518.002232.8055Neighbours21BLASTN1189908.gbk
61272850*131467541826Island text1.9200814.783326.8608Neighbours21BLASTN1272850.gbk
71346732*137206925338Island text2.6762316.517931.4717Neighbours21BLASTN1346732.gbk
81454764*148132826565Island text2.3381217.166434.0419Neighbours21BLASTN1454764.gbk