Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_018679: Alteromonas macleodii str. 'Balearic Sea AD45' chromosome, complete

NCBI: NC_018679

Host Lineage: Alteromonas macleodii; Alteromonas; Alteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Alteromonas macleodii is an obligate marine bacterium isolated from both surface and deep seawater and often associated with particulate matter. Strain Balearic Sea AD45 comes from surface waters of a fish farm near Valencia, Spain.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
127825029659918350Island text1.5309826.8322.25Neighbours21BLASTN+IslandViewer 278250.gbk
21738126177993841813Island text1.5488332.076852.1318Neighbours21BLASTN+1738126.gbk
31858448187665618209Island text1.5395426.471827.5616Neighbours21BLASTN+IslandViewer 1858448.gbk
42211000*223093119932Island text1.6938326.355822.0855Neighbours361BLASTN+2211000.gbk
52412000243472222723Island text1.6385528.390519.4165Neighbours41BLASTN+2412000.gbk
62541986256556223577Island text2.0413627.346822.0794Neighbours21BLASTN2541986.gbk
73197347322261025264Island text1.8659527.219119.2411Neighbours21BLASTN+3197347.gbk
83843870*386704523176Island text1.6811532.372246.3262Neighbours21BLASTN+IslandViewer 3843870.gbk
94028412404756319152Island text2.1715127.333127.5165Neighbours21BLASTN4028412.gbk