Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_018581: Gordonia sp. KTR9 chromosome, complete genome

NCBI: NC_018581

Host Lineage: Gordonia; Gordonia; Gordoniaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Isolated from soil at an explosives testing facility. Can transform hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX), a cyclic nitramine explosive. Many military ranges in the United States and Canada are contaminated with explosive and propellant residues. Of the nitroaromatic and nitramine explosives that exist on these sites, hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) has a low sorption capacity and can migrate through soil into surface water and groundwater.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
132092*5119319102Island text1.6696213.79916.4606Neighbours11BLASTNIslandViewer 32092.gbk
275993280124241311Island text2.4023321.398522.4879Neighbours11BLASTN+IslandViewer 759932.gbk
31180951122156540615Island text2.5305920.543127.1426Neighbours11BLASTNIslandViewer 1180951.gbk
41718023176570647684Island text1.8502316.131116.6603Neighbours11BLASTN+IslandViewer 1718023.gbk
52768743*283262663884Island text3.0004423.189831.2348Neighbours11BLASTNIslandViewer 2768743.gbk
63202281*322702624746Island text1.6496217.795618.1297Neighbours11BLASTN+3202281.gbk
73253731327470920979Island text2.5689622.067128.6641Neighbours11BLASTN+IslandViewer 3253731.gbk
83323500334596822469Island text1.5750215.201217.6869Neighbours11BLASTNIslandViewer 3323500.gbk
93646489367024523757Island text1.5746213.332915.1115Neighbours11BLASTN+IslandViewer 3646489.gbk
103871000389120420205Island text1.6886617.637425.4117Neighbours11BLASTN+IslandViewer 3871000.gbk
113971303*399035619054Island text1.5760920.425713.4981Neighbours11BLASTN+IslandViewer 3971303.gbk
124992952501689423943Island text1.6212816.917614.26Neighbours11BLASTNIslandViewer 4992952.gbk