Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_018000: Sinorhizobium fredii USDA 257 chromosome, complete genome

NCBI: NC_018000

Host Lineage: Sinorhizobium fredii; Sinorhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This organism, much like other Rhizobia, forms a symbiotic relationship with a leguminous plant, such as soybean, cowpea or pigeon pea. Expression of nodulation genes results in production of a nodulation signal which the plant cell recognizes inducing root nodule formation. The plant cell provides carbon compounds for the bacterium to grow on.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11207231122721319983Island text1.5231122.165631.7615Neighbours11BLASTN+1207231.gbk
21852691187631023620Island text1.5827628.063320.2687Neighbours11BLASTNIslandViewer 1852691.gbk
31877183190056123379Island text1.4850823.060624.5462Neighbours11BLASTN+IslandViewer 1877183.gbk
41914945196750552561Island text1.644422.973623.5468Neighbours11BLASTN+IslandViewer 1914945.gbk
52054098207318419087Island text1.5012122.078719.4695Neighbours11BLASTN+2054098.gbk
62543500*256365020151Island text1.5389623.348339.1491Neighbours11BLASTN2543500.gbk
72816637283959922963Island text1.6139722.782526.5767Neighbours11BLASTNIslandViewer 2816637.gbk
82964500299302928530Island text1.5945722.907221.2003Neighbours11BLASTNIslandViewer 2964500.gbk
93009864303384523982Island text1.6184822.478426.6716Neighbours11BLASTN+3009864.gbk
103371829*339389222064Island text1.531224.279525.0898Neighbours11IslandViewer 3371829.gbk
114958637*499909940463Island text1.5750123.285522.0305Neighbours11BLASTN+IslandViewer 4958637.gbk