Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_017343: Staphylococcus aureus subsp. aureus ECT-R 2, complete genome

NCBI: NC_017343

Host Lineage: Staphylococcus aureus; Staphylococcus; Staphylococcaceae; Bacillales; Firmicutes; Bacteria

General Information: Staphylcocci are generally found inhabiting the skin and mucous membranes of mammals and birds. Some members of this genus can be found as human commensals and these are generally believed to have the greatest pathogenic potential in opportunistic infections. This organism is a major cause of nosocomial (hospital-acquired) and community-acquired infections. S. aureus continues to be a major cause of mortality and is responsible for a variety of infections including, boils, furuncles, styes, impetigo and other superficial skin infections in humans. Also known to cause more serious infections particularly in the chronically ill or immunocompromised. The ability to cause invasive disease is associated with persistance in the nasal cavity of a host.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
116000*3417118172Island text1.6080518.931729.6798Neighbours325BLASTN16000.gbk
222477724819623420Island text1.3975219.157320.4593Neighbours21BLASTN224777.gbk
341683443459917766Island text3.1945318.351827.8353Neighbours21BLASTN416834.gbk
456600058500519006Island text1.8025819.927430.052Neighbours325BLASTN566000.gbk
51391124143409942976Island text2.755922.013233.3592Neighbours325BLASTN1391124.gbk
61748620*177109922480Island text1.7072820.229437.3249Neighbours21BLASTN1748620.gbk
71963912198196718056Island text1.6948428.64944.1301Neighbours21BLASTN+1963912.gbk
82212780*223125618477Island text1.8593821.096835.4293Neighbours325BLASTN+2212780.gbk
92367177239027623100Island text3.1488227.89736.4799Neighbours21BLASTN+2367177.gbk
102474743249859923857Island text2.1843918.655833.1405Neighbours21BLASTN2474743.gbk