Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017271: Xanthomonas campestris pv. raphani 756C chromosome, complete

NCBI: NC_017271

Host Lineage: Xanthomonas campestris; Xanthomonas; Xanthomonadaceae; Xanthomonadales; Proteobacteria; Bacteria

General Information: These organisms are almost exclusively found associated with their plant hosts and are not found free in the soil. This species is a major cause of black rot in crucifers, a disease that results in massive tissue degeneration. It also produces an extracellular polysaccharide known as xanthan, which is harvested commercially as a food stabilizing agent for use in industry.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1642938447720185Island text1.8413917.348625.533Neighbours11BLASTN64293.gbk
214985618038630531Island text2.6126.634422.3711Neighbours11BLASTN+149856.gbk
377000080074230743Island text3.5974329.208534.3369Neighbours11BLASTN+770000.gbk
41289278130809618819Island text1.8674324.249823.3988Neighbours11BLASTN1289278.gbk
51477323150318925867Island text1.4923919.625531.5081Neighbours11BLASTN+1477323.gbk
61517820154109923280Island text1.7736720.815125.6081Neighbours11BLASTN+1517820.gbk
72084219211460230384Island text1.7876921.053212.9939Neighbours11BLASTN+2084219.gbk
82221370*224045219083Island text2.1550723.85430.5837Neighbours11BLASTN2221370.gbk
92278500*230068822189Island text1.5975816.287721.4886Neighbours11BLASTN2278500.gbk
102449504*247688927386Island text1.811422.619825.4306Neighbours11BLASTN+2449504.gbk
112789667*281879429128Island text1.5289320.601923.1258Neighbours11BLASTN+2789667.gbk
122906000*292840922410Island text1.9622524.257627.1743Neighbours11BLASTN2906000.gbk
132935643300044264800Island text1.4567520.269935.6864Neighbours11BLASTN+2935643.gbk
143057161308709129931Island text2.606928.760131.9982Neighbours11BLASTN+3057161.gbk
153641705*368828446580Island text2.202527.414224.9878Neighbours11BLASTN+3641705.gbk
164058642407763618995Island text1.6123421.384515.2716Neighbours11BLASTN4058642.gbk
174193000422231829319Island text1.4997119.467422.3627Neighbours11BLASTN+4193000.gbk
184410500*443372223223Island text2.6249425.500122.4974Neighbours11BLASTN+4410500.gbk
194473000449159918600Island text1.7438520.61816.9042Neighbours11BLASTN4473000.gbk
204764404479002225619Island text1.6789118.29417.2311Neighbours11BLASTN+4764404.gbk
214852351488122728877Island text2.090124.57425.1527Neighbours11BLASTN+4852351.gbk