Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016929: Rickettsia canadensis str. CA410 chromosome, complete genome

NCBI: NC_016929

Host Lineage: Rickettsia canadensis; Rickettsia; Rickettsiaceae; Rickettsiales; Proteobacteria; Bacteria

General Information: Members of this genus, like other Rickettsial organisms such as Neorickettsia and Anaplasma, are obligate intracellular pathogens. In both groups, the bacteria are transmitted via an insect, usually a tick, to a host organism where they target endothelial cells and sometimes macrophages. They attach via an adhesin, rickettsial outer membrane protein A, and are internalized where they persist as cytoplasmically free organisms. This organism was originally thought to be a member of the typhus group of Rickettsiales, however, it is now thought to represent a distict group with the rickettsia.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
155974*7898323010Island text2.7276711.563723.8701Neighbours21BLASTN+55974.gbk
2109500*13209922600Island text1.6225715.55225.8408Neighbours21BLASTN109500.gbk
3141972*16932527354Island text1.5371714.087825.2348Neighbours21BLASTN141972.gbk
419740322097923577Island text2.018312.037919.1193Neighbours21BLASTN197403.gbk
5258500*27609917600Island text1.5890712.493922.0794Neighbours21BLASTN258500.gbk
6474000*49430320304Island text2.0165712.485823.2397Neighbours21BLASTN474000.gbk
7657451*68009922649Island text1.4972514.311827.1288Neighbours21BLASTN657451.gbk
882541384660321191Island text1.8275413.483421.8306Neighbours21BLASTN825413.gbk
9851044*87020419161Island text2.2632612.384524.1991Neighbours21BLASTN851044.gbk
101025848*105009924252Island text1.7049914.57224.1564Neighbours21BLASTN1025848.gbk