Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016860: Salmonella enterica subsp. enterica serovar Typhimurium str

NCBI: NC_016860

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. This strain was isolated in Japan in 2000. It is of definitive phage type 12 (DT12) and resistant against mulitple antimicrobials including fluoroquinolones.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1257584831722560Island text2.2223131.122316.9692Neighbours41BLASTN25758.gbk
233208735504222956Island text1.8063335.246736.0699Neighbours41BLASTN+332087.gbk
3364981*38661221632Island text1.6202430.37644.2969BLASTN+364981.gbk
439713842530328166Island text2.437335.942623.0522Neighbours41BLASTN+397138.gbk
5644095*66364019546Island text1.8738729.809125.533Neighbours41BLASTN+644095.gbk
681600084337627377Island text3.5841543.612624.2463Neighbours41BLASTN+816000.gbk
7857500*88059923100Island text1.9504931.840829.9331Neighbours51BLASTN+857500.gbk
895960998399824390Island text2.158837.709218.5257Neighbours41BLASTN+959609.gbk
91168431*118865820228Island text1.8439529.19519.8502Neighbours51BLASTN1168431.gbk
101205282*123061025329Island text1.8551732.657123.6725Neighbours41BLASTN+1205282.gbk
111317174*134417327000Island text2.4549337.084530.1832Neighbours41BLASTN+1317174.gbk
121399290*142270223413Island text1.7857632.560722.1464Neighbours41BLASTN+1399290.gbk
131469066150663237567Island text1.8242633.472434.2713Neighbours41BLASTN+1469066.gbk
141614280*163363719358Island text1.6637930.198227.2262Neighbours41BLASTN+1614280.gbk
151710950*173464523696Island text2.5562238.545320.7135Neighbours41BLASTN+1710950.gbk
161752000177541223413Island text1.5697330.325927.4272Neighbours41BLASTN+1752000.gbk
171943203*197026927067Island text1.9420735.572725.8455Neighbours41BLASTN+1943203.gbk
182148535218250733973Island text3.9886742.904528.1387Neighbours41BLASTN+2148535.gbk
192323017*236087137855Island text1.7289833.519722.2571Neighbours51BLASTN+2323017.gbk
202716152273620320052Island text1.6577130.289433.2501Neighbours41BLASTN+2716152.gbk
212896254291465618403Island text1.5204137.709852.4851Neighbours41BLASTN+2896254.gbk
222917910*296367845769Island text1.5337331.301727.6099Neighbours41BLASTN+2917910.gbk
233029272*308505755786Island text2.4237337.093923.6398Neighbours41BLASTN+3029272.gbk
243925500*395029124792Island text2.0635434.337526.5099Neighbours41BLASTN3925500.gbk
253964000*398716423165Island text2.584539.051220.6607Neighbours41BLASTN+3964000.gbk
263995445402079625352Island text1.4986530.386734.2429Neighbours41BLASTN+3995445.gbk
274024000404769523696Island text1.4456234.1526.3126Neighbours41BLASTN+4024000.gbk
284055117410271647600Island text1.497538.557922.853Neighbours41BLASTN+4055117.gbk
294110968413561624649Island text1.6416732.327423.5006Neighbours41BLASTN+4110968.gbk
304575772460424228471Island text1.698735.94424.8605Neighbours41BLASTN+4575772.gbk
314649274*466822418951Island text1.6037338.117157.3639Neighbours41BLASTN+4649274.gbk