Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016844: Treponema pallidum subsp. pallidum DAL-1 chromosome, complete

NCBI: NC_016844

Host Lineage: Treponema pallidum; Treponema; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: This organism is the causative agent of endemic and venereal syphilis. This sexual transmitted disease was first discovered in Europe at the end of the fifteenth century, however, the causative agent was not identified until 1905. At one time syphilis was the third most commonly reported communicable disease in the USA. Syphilis is characterized by multiple clinical stages and long periods of latent, asymptomatic infection. Although effective therapies have been available since the introduction of penicillin, syphilis remains a global health problem.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112545*3293320389Island text1.7941137.007554.7277Neighbours10BLASTN+12545.gbk
2107382*13088723506Island text1.4304934.989139.1704Neighbours10BLASTN+107382.gbk
354706957673029662Island text1.4370433.967752.9845Neighbours10BLASTN+547069.gbk
4748117*76876520649Island text1.8322241.899124.1374Neighbours10BLASTN+748117.gbk
5775334*79859223259Island text1.6154235.862839.5998Neighbours10BLASTN+775334.gbk
6950231*97240922179Island text1.8149935.510643.4706Neighbours10BLASTN+950231.gbk