Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016832: Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,

NCBI: NC_016832

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Salmonella enterica subspecies enterica serovar Typhi P-stx-12 is a clinical isolate obtained from a Typhoid Carrier in India. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1258074831322507Island text2.2971732.040419.7953Neighbours41BLASTN25807.gbk
253120855510523898Island text2.2293835.112922.3212Neighbours41BLASTN+531208.gbk
3687000*70962022621Island text1.7147136.133726.8076Neighbours51BLASTN+687000.gbk
479976483164331880Island text3.3941641.702427.3163Neighbours41BLASTN+799764.gbk
586195689748635531Island text4.2862243.923528.332Neighbours41BLASTN+861956.gbk
6948029*98758539557Island text3.7308946.54620.4526Neighbours41BLASTN+948029.gbk
71090274*111389423621Island text1.9839832.199727.8262Neighbours41BLASTN+1090274.gbk
81182496*121359931104Island text2.982940.861324.558Neighbours41BLASTN+1182496.gbk
91269018*128796718950Island text1.7915829.641918.8086Neighbours41BLASTN1269018.gbk
101324820135037125552Island text2.2734334.569130.9515Neighbours41BLASTN1324820.gbk
111582273*160422721955Island text2.0837833.399625.3025Neighbours41BLASTN+1582273.gbk
121838220*185997621757Island text1.6161830.073627.2384Neighbours41BLASTN+1838220.gbk
131880174*190219322020Island text1.8788531.410729.3499Neighbours41BLASTN+1880174.gbk
142201860223169329834Island text3.3186441.404925.7154Neighbours41BLASTN+2201860.gbk
152363136238115718022Island text1.875931.441521.3424Neighbours41BLASTN+2363136.gbk
162581145*260373122587Island text2.2778836.958928.1003Neighbours41BLASTN+2581145.gbk
172612809264154728739Island text1.591536.350133.6166Neighbours41BLASTN+2612809.gbk
182743801276616322363Island text1.8271731.028124.126Neighbours51BLASTN+2743801.gbk
192829767285853728771Island text2.2800636.294724.6918Neighbours41BLASTN+2829767.gbk
202859491288161422124Island text1.6983931.733333.9445Neighbours41BLASTN+2859491.gbk
213020000*304033920340Island text1.5885936.586828.0205BLASTN+3020000.gbk
223100683*312575225070Island text2.8604141.466818.296Neighbours41BLASTN+3100683.gbk
233798475382209923625Island text1.5454137.639852.3024Neighbours41BLASTN+3798475.gbk
243858815387884020026Island text1.6744335.21726.2344Neighbours41BLASTN+3858815.gbk
253900000*392586925870Island text1.647930.8724.0468Neighbours41BLASTN3900000.gbk
264288980431615127172Island text3.1298441.549823.4091Neighbours41BLASTN4288980.gbk
274368948439049121544Island text2.4074737.193333.9936Neighbours41BLASTN4368948.gbk
284425330444562620297Island text1.8796331.85730.1437BLASTN4425330.gbk
294482437450087118435Island text1.5731239.589435.3504Neighbours41BLASTN+4482437.gbk
304649432*467558226151Island text1.7640630.584327.0557Neighbours41BLASTN+4649432.gbk