Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016812: Sinorhizobium fredii HH103, complete genome

NCBI: NC_016812

Host Lineage: Sinorhizobium fredii; Sinorhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This organism, much like other Rhizobia, forms a symbiotic relationship with a leguminous plant, such as soybean, cowpea or pigeon pea. Expression of nodulation genes results in production of a nodulation signal which the plant cell recognizes inducing root nodule formation. The plant cell provides carbon compounds for the bacterium to grow on.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1152831*17609923269Island text1.4971619.260721.6348Neighbours11BLASTN152831.gbk
225850029459936100Island text1.6691227.119625.8595Neighbours11BLASTN+258500.gbk
346300048544922450Island text1.7426527.572318.0619Neighbours11BLASTN+463000.gbk
43641786366461722832Island text2.1877527.324136.8352Neighbours11BLASTN+3641786.gbk
54246542427859932058Island text2.1127127.202232.5305Neighbours11BLASTN+4246542.gbk