Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016630: Filifactor alocis ATCC 35896 chromosome, complete genome

NCBI: NC_016630

Host Lineage: Filifactor alocis; Filifactor; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Filifactor alocis, originally known as Fusobacterium alocis, was first isolated in1985 from the human gingival crevice, and has since been discovered in patients suffering from chronic periodontitis, generalized aggressive, periodontitis and endodontic infections. It has also been isolated from feline soft tissue infections. It is a fastidious, Gram-positive obligately anaerobic rod. Bacteria in periodontal pockets develop complex sessile communities that attach to the tooth surface.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
128410*5665028241Island text1.7006117.658531.7496Neighbours21BLASTN28410.gbk
243450045209917600Island text1.4975428.27733.1405BLASTN+434500.gbk
3864601*90573441134Island text1.5897819.766543.5132Neighbours21BLASTN864601.gbk
41247251*129130044050Island text1.9485521.424241.5784Neighbours21BLASTN+1247251.gbk
51385719*140809922381Island text1.7602718.526542.5353Neighbours21BLASTN+1385719.gbk
61462788*148102218235Island text2.6587621.944946.2861Neighbours344BLASTN1462788.gbk
71610723*162909918377Island text2.0280224.350339.8607Neighbours34BLASTN1610723.gbk
81890917191199621080Island text1.5278722.398934.1884Neighbours34BLASTN+1890917.gbk