Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016445: Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, complete

NCBI: NC_016445

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae O1 str. 2010EL-1786 (ATCC BAA-2163) is a 2010 outbreak strain of Vibrio cholerae from Haiti. Isolated from stool sample from patient with cholera.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
18950012158132082Island text1.8071334.633323.8145Neighbours42BLASTN+89500.gbk
233828836740629119Island text1.6133734.235256.9527Neighbours21BLASTN+338288.gbk
345210047059918500Island text1.8018532.834425.4477Neighbours21BLASTN+452100.gbk
4984856100583820983Island text1.5094532.076844.2807Neighbours41BLASTN+984856.gbk
51027143105809930957Island text1.651232.985828.1423BLASTN+1027143.gbk
61363831*142391760087Island text1.4236137.451437.8792Neighbours21BLASTN+1363831.gbk
72012294*203510422811Island text1.5735334.339628.5617Neighbours44BLASTN+2012294.gbk
82593800262585532056Island text2.0424435.626331.6244Neighbours13BLASTN+2593800.gbk
92663837270271138875Island text1.5243734.446753.2391Neighbours41BLASTN+2663837.gbk
102938887*297569636810Island text1.5040437.086656.9588Neighbours21BLASTN+2938887.gbk