Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015949: Caldicellulosiruptor lactoaceticus 6A chromosome, complete genome

NCBI: NC_015949

Host Lineage: Caldicellulosiruptor lactoaceticus; Caldicellulosiruptor; Thermoanaerobacterales Family III; Thermoanaerobacterales; Firmicutes; Bacteria

General Information: Environment: Hot spring; Isolation: Alkaline hot spring; Iceland, Hveragerdi; Temp: Thermophile; Temp: 79C; Caldicellulosiruptor lactoaceticus is an extreme thermophile spore-forming bacterium. This organism produces a thermostable cellulase which may have industrial uses.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
163363009923764Island text2.4998729.803951.833Neighbours21BLASTN6336.gbk
2474146895321540Island text1.7248821.505739.7003Neighbours21BLASTN+47414.gbk
3714749532423851Island text1.4904321.327833.2075Neighbours21BLASTN+71474.gbk
442892344936220440Island text1.6943121.412938.7288Neighbours21BLASTN428923.gbk
51180755*121693036176Island text2.0305729.404742.4875Neighbours21BLASTN+1180755.gbk
61301004132159220589Island text1.8854421.592345.1395Neighbours21BLASTN+1301004.gbk
71363053*138275819706Island text1.6471921.029938.1411Neighbours21BLASTN1363053.gbk
81719575175635436780Island text2.0811521.931441.3342NeighboursBLASTN+IslandViewer 1719575.gbk
91767552179218924638Island text2.5518320.914427.0679Neighbours21BLASTN+IslandViewer 1767552.gbk
101887478191009922622Island text1.7721220.291246.0105Neighbours21BLASTN1887478.gbk
111957185*197800220818Island text1.5266221.703640.1815NeighboursBLASTN1957185.gbk
122002752*202359920848Island text1.6370121.845845.5232Neighbours21BLASTN+2002752.gbk
132101302*212678325482Island text2.2007427.358946.2839Neighbours21BLASTN+2101302.gbk
142156843217774420902Island text2.5372521.344939.1216Neighbours21BLASTN+2156843.gbk
152327500*234860221103Island text2.4137833.206750.8162Neighbours21BLASTN+2327500.gbk
162418232245692138690Island text1.9267122.823843.4223Neighbours21BLASTN+IslandViewer 2418232.gbk