Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015703: Runella slithyformis DSM 19594 chromosome, complete genome

NCBI: NC_015703

Host Lineage: Runella slithyformis; Runella; Cytophagaceae; Cytophagales; Bacteroidetes; Bacteria

General Information: Environment: Fresh water, Host; Isolation: Fresh water lake; USA, Louisiana, Baton; Temp: Psychrophile. This is a species of curved, nonflexible, pink bacteria. The species is of interest because it is able to grow at temperatures as low as 4°C. The species epithet is derived from slithy, a nonsense word from Lewis Carroll's Jabberwocky for a fictional organism that is 'slithy' and the Latin word 'suffix' meaning '-like, in the shape of', yielding the Neo-Latin word 'slithyformis' meaning 'slithy in form'.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1234960*25450919550Island text1.7051635.165454.7722Neighbours39BLASTN+234960.gbk
275417278042826257Island text2.2100733.223514.4567Neighbours39BLASTN+754172.gbk
31087809111492927121Island text2.5800135.991117.2977Neighbours24BLASTN+1087809.gbk
41898159*193254934391Island text1.5971331.513534.6164Neighbours39BLASTN+1898159.gbk
51992000*201652924530Island text1.9977131.556428.3691Neighbours24BLASTN1992000.gbk
62104058*212853624479Island text2.1083835.199120.0329Neighbours24BLASTN2104058.gbk
72281479230423422756Island text1.7623732.360418.6392Neighbours24BLASTN+2281479.gbk
82693463271654823086Island text1.5124631.535719.8441Neighbours39BLASTN+2693463.gbk
93325780334903923260Island text1.459130.593419.8014Neighbours39BLASTN+3325780.gbk
103444025348147437450Island text1.6351830.290730.7444Neighbours39BLASTN+IslandViewer 3444025.gbk
113637312366291225601Island text2.0770633.370718.8574Neighbours39BLASTN+3637312.gbk
123746057376907423018Island text1.8422531.807124.4372Neighbours319BLASTN3746057.gbk
133801168382300821841Island text1.6081231.601118.0564Neighbours24+3801168.gbk
143842144*386963427491Island text2.2989533.627812.8115Neighbours24BLASTN+IslandViewer 3842144.gbk
153880903*392459643694Island text1.6787833.915828.3133Neighbours24BLASTN+IslandViewer 3880903.gbk
164348545436978221238Island text1.6329932.082926.5406Neighbours39BLASTN4348545.gbk
174417342444233224991Island text1.6494934.277329.0973Neighbours39BLASTN+4417342.gbk
184483500*451824934750Island text1.6735532.581428.3187Neighbours24BLASTN+4483500.gbk
194531578*457833746760Island text2.2989333.345717.8645Neighbours21BLASTN+IslandViewer 4531578.gbk
204655488*468131425827Island text1.8161532.308322.575Neighbours24BLASTN4655488.gbk
214933430*499273859309Island text2.0568632.519723.9468Neighbours24BLASTN+IslandViewer 4933430.gbk
225013615503509921485Island text1.6361233.667124.4723Neighbours21BLASTN+IslandViewer 5013615.gbk
235272193*530097228780Island text2.1480235.751220.3447Neighbours24BLASTN5272193.gbk
245391478542218930712Island text1.4561529.687535.5403Neighbours39BLASTN5391478.gbk
255649260*567018220923Island text1.5282531.420227.4747Neighbours39BLASTN+IslandViewer 5649260.gbk
265865921589676830848Island text1.5454233.699919.7283Neighbours21BLASTN+IslandViewer 5865921.gbk
276295500*632251327014Island text1.966632.206619.5359Neighbours24BLASTN+6295500.gbk