Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015690: Paenibacillus mucilaginosus KNP414 chromosome, complete genome

NCBI: NC_015690

Host Lineage: Paenibacillus mucilaginosus; Paenibacillus; Paenibacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Paenibacillus mucilaginosus is critical silicate bacteria in the biogeochemical cycling of potassium, phosphorus, and other soil elements, and is widely used in agriculture, bioleaching, and wastewater treatment. P. mucilaginosus is able to degrade insoluble soil minerals with the release of nutritional ions and fix nitrogen, and thus it has been successfully used as a biofertilizer since the 1990s. The exocellular polysaccharides produced by P. mucilaginosus is also an effective bioflocculant, and thus plays a potential role in the treatment of wastewater and biohydrometallurgy.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
17522310369828476Island text2.3060841.188841.1978Neighbours315BLASTN75223.gbk
2632565*67426641702Island text5.4766158.930427.0255Neighbours31BLASTN+632565.gbk
379050081630625807Island text3.6085545.315530.477Neighbours315BLASTN790500.gbk
497713199636719237Island text1.7849432.413325.6091Neighbours315BLASTN977131.gbk
51109335116959960265Island text3.817946.846124.8036Neighbours21BLASTN+IslandViewer 1109335.gbk
61186545126259476050Island text4.2032248.752438.8588Neighbours315BLASTN+IslandViewer 1186545.gbk
71348691*137854829858Island text2.2190135.199130.644Neighbours31BLASTN+IslandViewer 1348691.gbk
81542061156749825438Island text3.303642.810732.9924Neighbours315BLASTN1542061.gbk
91726000176447638477Island text2.1453133.745126.3893Neighbours315BLASTN+IslandViewer 1726000.gbk
101772015180136829354Island text2.3299339.30526.6902Neighbours3151772015.gbk
111818333*1947673129341Island text2.4737939.086132.775Neighbours315BLASTN+1818333.gbk
121929599196713837540Island text1.8191835.002928.7873Neighbours315BLASTN+1929599.gbk
131967244*202617758934Island text1.9681135.644938.4018Neighbours315BLASTN+1967244.gbk
142039215*208264643432Island text2.2451137.652433.6328Neighbours315BLASTN+IslandViewer 2039215.gbk
152369510238768818179Island text1.7754931.471929.4433Neighbours315BLASTN+2369510.gbk
162553837257509921263Island text2.155536.240825.4553Neighbours315BLASTN2553837.gbk
172674187269809923913Island text1.8496432.213627.7622Neighbours315BLASTN2674187.gbk
183269000*329089321894Island text1.9504835.442935.8422Neighbours315BLASTN+3269000.gbk
193438288346209923812Island text2.6065739.322626.7717Neighbours315BLASTN3438288.gbk
203477573*352375146179Island text2.6946339.261327.5483Neighbours11BLASTN+IslandViewer 3477573.gbk
213883243390609922857Island text2.3461437.827826.6692Neighbours315BLASTN+3883243.gbk
223941113*401959978487Island text3.1908844.418129.3093Neighbours31BLASTN+IslandViewer 3941113.gbk
234361000444882087821Island text2.4059640.794331.3906Neighbours31BLASTN+IslandViewer 4361000.gbk
244469775455660686832Island text2.3924738.816330.8881Neighbours11BLASTN+4469775.gbk
254592582461897826397Island text2.6634841.989526.0673Neighbours315BLASTN+4592582.gbk
264643869468016136293Island text2.3671940.228932.3305Neighbours315BLASTN4643869.gbk
275263108528259919492Island text1.657634.172832.9618Neighbours315BLASTN+5263108.gbk
286521740*655859936860Island text4.5122551.061428.5667Neighbours315BLASTN+IslandViewer 6521740.gbk
296595395662962034226Island text4.9472851.624936.8648Neighbours315BLASTN+IslandViewer 6595395.gbk
307334786735842623641Island text1.6684634.928333.7556Neighbours11BLASTN7334786.gbk
317422911744193219022Island text2.1740733.429631.8857Neighbours315BLASTN+7422911.gbk
327518732*754209923368Island text2.0268834.365935.0164Neighbours11BLASTN7518732.gbk
337785875784547059596Island text4.6421551.748230.4824Neighbours31BLASTN+IslandViewer 7785875.gbk
348019859*804461124753Island text2.2945334.37552.1531Neighbours315BLASTN8019859.gbk
358614000863623422235Island text1.8247930.33238.1654Neighbours315BLASTN8614000.gbk
368645500*866749922000Island text2.1610434.103437.4497Neighbours315BLASTN8645500.gbk