Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015660: Geobacillus thermoglucosidasius C56-YS93 chromosome, complete

NCBI: NC_015660

Host Lineage: Geobacillus thermoglucosidasius; Geobacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Temp: Hyperthermophile; Temp: 55 - 65C. The organism is able to utilizing a wide range of substrates, including pentose (C5) and hexose (C6) in agricultural waste and is tolerant to high ethanol concentrations. These properties make it an attractive candidate for bioethanol production.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
129648833673140244Island text4.0942331.323919.1035Neighbours21BLASTN+IslandViewer 296488.gbk
2391627*41770326077Island text2.5217228.935822.5714Neighbours21BLASTN391627.gbk
348750653473247227Island text1.5983727.58331.3204Neighbours21BLASTN+IslandViewer 487506.gbk
473904075972520686Island text1.6241727.553841.2267Neighbours21BLASTN+739040.gbk
51076159109409917941Island text2.0405927.310312.2Neighbours21BLASTN+1076159.gbk
61784553180348718935Island text1.5517729.286245.2674Neighbours23BLASTNIslandViewer 1784553.gbk
71869962188959919638Island text1.8970527.339718.537NeighboursBLASTN1869962.gbk
81896904191718820285Island text1.846727.386923.6177Neighbours21BLASTN+1896904.gbk
91918307*194409925793Island text2.5576429.069514.4887Neighbours21BLASTN+IslandViewer 1918307.gbk
101988000201074822749Island text1.5548728.830314.5328Neighbours21BLASTN+1988000.gbk
112685842270904623205Island text2.2995528.039231.4936Neighbours21BLASTN2685842.gbk
123174424319864024217Island text1.8194627.280921.1276Neighbours21BLASTN+IslandViewer 3174424.gbk
133328595335740428810Island text1.8147128.070111.1807Neighbours21BLASTN+IslandViewer 3328595.gbk
143467579*349825230674Island text1.8680328.962226.5032Neighbours21BLASTN+3467579.gbk
153518931356423445304Island text2.2485229.047122.1747Neighbours21BLASTN+IslandViewer 3518931.gbk
163643370366609922730Island text1.8216525.951523.9493Neighbours21BLASTN+3643370.gbk