Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015634: Bacillus coagulans 2-6 chromosome, complete genome

NCBI: NC_015634

Host Lineage: Bacillus coagulans; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Bacillus coagulans, a lactic acid producing bacterium, was first identified as a spoilage agent of milk products. This organism can be used in the production of ethanol and lactic acid from cellulose and hemicellulose acid hydrolysate. Bacillus coagulans also produces other commercially important chemicals like cyclodextrins and amylases, and has been used as a probiotic in animal feed.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1359500*41145351954Island text2.7981837.129219.3348Neighbours21BLASTN+IslandViewer 359500.gbk
252688954615519267Island text1.5517128.455320.9506Neighbours24BLASTN+526889.gbk
3652000*68242630427Island text2.8205637.513124.4558Neighbours23BLASTN+IslandViewer 652000.gbk
495939698772928334Island text2.0091535.098821.4471Neighbours23BLASTN+IslandViewer 959396.gbk
51377376139529317918Island text1.5266227.842325.2954Neighbours24BLASTN+IslandViewer 1377376.gbk
62445396*246386918474Island text1.5270527.714617.6148Neighbours21BLASTN+2445396.gbk
72492771252463531865Island text1.9276538.16521.7381Neighbours21BLASTN+IslandViewer 2492771.gbk
82547144257259925456Island text2.1162634.573713.3836Neighbours21BLASTN+IslandViewer 2547144.gbk
92595500262767532176Island text1.8265935.990928.0466Neighbours21BLASTN+IslandViewer 2595500.gbk
102694706*272077526070Island text2.1401535.666814.132Neighbours21BLASTN+IslandViewer 2694706.gbk
112779392279950020109Island text1.5406832.763920.7618Neighbours21BLASTN+IslandViewer 2779392.gbk
122933712296012626415Island text1.835432.36316.2666Neighbours23BLASTN+2933712.gbk
132991669301576924101Island text1.5266533.426616.3662Neighbours24BLASTN+IslandViewer 2991669.gbk
143017564*305008732524Island text2.2734135.838223.9259Neighbours21BLASTN+IslandViewer 3017564.gbk