Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015593: Sphingobium chlorophenolicum L-1 chromosome chromosome 1, complete

NCBI: NC_015593

Host Lineage: Sphingobium chlorophenolicum; Sphingobium; Sphingomonadaceae; Sphingomonadales; Proteobacteria; Bacteria

General Information: Environment: Soil; Isolation: Sediment, freshwater; Temp: Mesophile; Isolation: freshwater sediment; Country:USA: Minnesota. Sphingobium chlorophenolicum is a gram-negative bacillus isolatedfrom a pentachlorophenol (PCP)-contaminated soil in Minnesota.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
115810720009941993Island text1.5739223.727220.3214Neighbours11BLASTN+IslandViewer 158107.gbk
2203000*23519632197Island text2.161725.535643.5369Neighbours11BLASTN+203000.gbk
3463477*48670723231Island text1.5446322.806419.3665Neighbours11BLASTNIslandViewer 463477.gbk
4797675*82008322409Island text1.8716226.089112.971Neighbours11BLASTN+IslandViewer 797675.gbk
51587684160559917916Island text1.6206820.285119.2654Neighbours11BLASTN+IslandViewer 1587684.gbk
62103815*214825244438Island text2.4537127.969324.7496Neighbours11BLASTN+IslandViewer 2103815.gbk
72246352226475318402Island text1.4607720.999523.4742Neighbours11BLASTN2246352.gbk
82271097229279421698Island text1.5584522.601518.0077Neighbours11BLASTN2271097.gbk
92447844*246959921756Island text2.1459225.321632.5564Neighbours11BLASTN+2447844.gbk
102553500*259301139512Island text2.7137530.244824.7226Neighbours11BLASTN+IslandViewer 2553500.gbk
112696000271683320834Island text1.529922.962126.5489Neighbours11BLASTN2696000.gbk
122841856*289459952744Island text2.5463631.153827.5939Neighbours11BLASTN+IslandViewer 2841856.gbk
132914384293209917716Island text1.6955519.847423.7057Neighbours11BLASTNIslandViewer 2914384.gbk