Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_015590: Sinorhizobium meliloti AK83 chromosome 1, complete sequence

NCBI: NC_015590

Host Lineage: Sinorhizobium meliloti; Sinorhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Environment: Host, Plant root, Root nodule, Soil; Temp: Mesophile; Temp: 25 - 30C. This organism, much like other Rhizobia, forms a symbiotic relationship with a leguminous plant, in this case the alfalfa plant (Medicago sativa). Expression of nodulation genes results in production of a nodulation signal which the plant cell recognizes inducing root nodule formation. The plant cell provides carbon compounds for the bacterium to grow on.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
114535316398818636Island text1.5278626.863426.3948Neighbours11BLASTN+IslandViewer 145353.gbk
229806331936521303Island text1.5866926.156221.6003Neighbours11BLASTN+IslandViewer 298063.gbk
31398157142021022054Island text1.6334726.996222.2696Neighbours11IslandViewer 1398157.gbk
41425628144558019953Island text1.4810824.063727.2354Neighbours112IslandViewer 1425628.gbk
52290359231506824710Island text1.6021322.647820.0234Neighbours11BLASTNIslandViewer 2290359.gbk