Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015581: Thioalkalimicrobium cyclicum ALM1 chromosome, complete genome

NCBI: NC_015581

Host Lineage: Thioalkalimicrobium cyclicum; Thioalkalimicrobium; Piscirickettsiaceae; Thiotrichales; Proteobacteria; Bacteria

General Information: Isolation: Water; USA, California, Lake Mono. This organism is a sulfur-oxidizing bacterium isolated from highly alkaline soda lakes. These bacteria have a pH optimum of 10 and are able to oxidize sulfide, thiosulfate and tetrathionate.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1128350*15453826189Island text1.4821634.210837.9218Neighbours320BLASTN128350.gbk
268046070455824099Island text2.0424433.461920.522Neighbours21BLASTN680460.gbk
3771482*80463933158Island text1.6581431.801449.7267Neighbours21BLASTN+771482.gbk
41043394108183738444Island text1.6045732.671641.6396Neighbours42BLASTN1043394.gbk
51133775*115637722603Island text2.1237333.704425.1905Neighbours42BLASTN1133775.gbk
61731120175468923570Island text1.4899733.256328.6454Neighbours21BLASTN1731120.gbk
71791658*181419122534Island text1.8990532.792243.2901Neighbours21BLASTN+1791658.gbk
81891409*191922227814Island text1.7551831.693825.1797Neighbours21BLASTN+1891409.gbk