Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015562: Methanotorris igneus Kol 5 chromosome, complete genome

NCBI: NC_015562

Host Lineage: Methanotorris igneus; Methanotorris; Methanocaldococcaceae; Methanococcales; Euryarchaeota; Archaea

General Information: Country: Iceland; Environment: Marine, Submarine; Isolation: Shallow submarine vent system; Temp: Hyperthermophile; Temp: 85C. Methanotorris igneus is an acidophilic methanogen first isolated from a shallow hydrothermal vent.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
122200024501823019Island text1.9824219.493328.2654Neighbours21BLASTNIslandViewer 222000.gbk
243612845451718390Island text1.7755218.841231.8187Neighbours21BLASTN+436128.gbk
362700064529218293Island text1.6563518.835129.1448Neighbours21BLASTN627000.gbk
475578577857322789Island text2.335219.202928.4748Neighbours21BLASTN+755785.gbk
5785959*80851422556Island text1.6828418.503827.2993Neighbours21BLASTN+785959.gbk
6899030*93859939570Island text2.528720.229833.3417Neighbours21BLASTN+899030.gbk
71081826*110670124876Island text2.5372339.730434.356Neighbours21BLASTN+1081826.gbk
81189111*122902639916Island text1.761319.567735.3271Neighbours21BLASTN1189111.gbk
91230532*125831027779Island text1.7515822.119735.5603Neighbours21BLASTN1230532.gbk
101299648*132285923212Island text1.8916119.43428.5114Neighbours21BLASTN1299648.gbk
111386535*141317326639Island text2.8070236.8634.0832Neighbours21BLASTN+1386535.gbk
121413264143429421031Island text2.9165418.971924.0711Neighbours21BLASTN1413264.gbk
131460124*150081340690Island text1.4586619.79126.4962Neighbours21BLASTN1460124.gbk
141571928*160299931072Island text2.2679823.078640.0892Neighbours21BLASTN+1571928.gbk
151708000173074722748Island text2.9314317.822830.7894Neighbours21BLASTN+1708000.gbk
161816000*183809922100Island text2.0090216.360729.7357Neighbours21BLASTN1816000.gbk