Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015500: Treponema brennaborense DSM 12168 chromosome, complete genome

NCBI: NC_015500

Host Lineage: Treponema brennaborense; Treponema; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: Environment: Host; Isolation: Ulcerative lesion of a bovine foot infected; Temp. Mesophile. This organism is the causative agent for digital dermatitis in bovines. This disease produces painful lesions on the foot and can cause weight loss and decreased milk production.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
17822310560027378Island text4.2502141.268219.7229Neighbours330BLASTN+IslandViewer 78223.gbk
2159199*18265123453Island text2.0008629.654129.9245Neighbours330BLASTN+IslandViewer 159199.gbk
3311845*34242930585Island text4.9317643.053916.0966Neighbours330BLASTNIslandViewer 311845.gbk
448498451697531992Island text4.0367343.863621.4801Neighbours24BLASTN+IslandViewer 484984.gbk
5533528*55928525758Island text2.3876835.815517.0634Neighbours330BLASTN+IslandViewer 533528.gbk
690080793036629560Island text3.6081942.723218.918Neighbours330BLASTN+IslandViewer 900807.gbk
7987641*101630028660Island text3.4054840.421523.7422Neighbours330BLASTNIslandViewer 987641.gbk
81204501123488830388Island text3.0014943.224722.1505Neighbours330BLASTN+IslandViewer 1204501.gbk
91236874*127809941226Island text1.6520431.548722.3808Neighbours330BLASTN+IslandViewer 1236874.gbk
101337180136086023681Island text2.0972135.388318.364Neighbours330BLASTN+IslandViewer 1337180.gbk
111557772157909921328Island text1.7837133.404954.1454Neighbours330BLASTN+IslandViewer 1557772.gbk
121923514196644142928Island text3.009941.30919.5036Neighbours330BLASTNIslandViewer 1923514.gbk
132112975214941636442Island text2.4637640.461221.2807Neighbours330BLASTN+IslandViewer 2112975.gbk
142197000222270025701Island text2.4111839.17519.2068Neighbours330BLASTNIslandViewer 2197000.gbk
152329957*237110241146Island text2.7511636.800741.9303Neighbours24BLASTN+IslandViewer 2329957.gbk
162417041*244053623496Island text1.8155432.201525.338Neighbours330BLASTN+IslandViewer 2417041.gbk
172636753265995423202Island text1.7157136.003824.6827Neighbours330BLASTN+IslandViewer 2636753.gbk
182866027*291764651620Island text3.5121745.772518.1603Neighbours330BLASTN+IslandViewer 2866027.gbk
192950660*297090420245Island text1.6705429.319722.384Neighbours330IslandViewer 2950660.gbk