Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015177: Pedobacter saltans DSM 12145 chromosome, complete genome

NCBI: NC_015177

Host Lineage: Pedobacter saltans; Pedobacter; Sphingobacteriaceae; Sphingobacteriales; Bacteroidetes; Bacteria

General Information: Country: Iceland; Environment: Marine; Isolation: Soil, Iceland; Temp: Mesophile. Strains of the genus Pedobacter are heparinase-producing, obligately aerobic, Gram-negative rods.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112400014722823229Island text1.3716922.391827.0739Neighbours21BLASTN+124000.gbk
2258504*28217523672Island text2.2855531.16841.1878Neighbours21BLASTN258504.gbk
339177441432522552Island text1.498221.212333.9445Neighbours21391774.gbk
4915366*93912523760Island text3.7294934.376147.423Neighbours21BLASTN+915366.gbk
5981552100460423053Island text1.5837921.105933.1222Neighbours21981552.gbk
61131173*117511143939Island text1.607922.740236.3804Neighbours21BLASTN+1131173.gbk
71476073150567729605Island text1.840727.025237.4717Neighbours21BLASTN+1476073.gbk
81822000184495922960Island text1.6475431.40227.3143Neighbours21BLASTN+IslandViewer 1822000.gbk
91859879188524325365Island text1.5068225.853726.6656Neighbours24BLASTN+IslandViewer 1859879.gbk
101950461*197627225812Island text1.9028634.911937.0353Neighbours21BLASTN+IslandViewer 1950461.gbk
112271499229499723499Island text1.5554621.060329.9184Neighbours21BLASTN2271499.gbk
122482253*250169619444Island text1.5350920.853634.6023Neighbours21BLASTN2482253.gbk
132559903258209922197Island text1.7671219.020534.3343Neighbours21+2559903.gbk
142642368*266519022823Island text2.5740627.777239.055Neighbours21BLASTN+IslandViewer 2642368.gbk
152795487*284521049724Island text1.6001130.891143.7061Neighbours21BLASTN2795487.gbk
162972701*302423351533Island text2.5224129.240943.6334Neighbours21BLASTN+2972701.gbk
173195249321944024192Island text1.5606922.125839.3745Neighbours21BLASTN3195249.gbk
184042976406509922124Island text1.8438222.333336.3425Neighbours21BLASTN4042976.gbk
194316359434094924591Island text1.8407319.166536.0519Neighbours214316359.gbk
204478986450884129856Island text1.6376921.960137.5688Neighbours21BLASTN4478986.gbk