Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014727: Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,

NCBI: NC_014727

Host Lineage: Lactobacillus delbrueckii; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This strain is isolated from traditional dairy products of minority nationalities in China. The subspecies bulgaricus is used as a starter culture for a number of fermented dairy products such as yogurt and Swiss and Italian-type cheeses, and is a thermophilic culture, where the optimum temperature is 42 C.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
195875*11860222728Island text1.9009135.958422.9856Neighbours326BLASTN+95875.gbk
218600020522719228Island text1.8246532.39323.5879Neighbours326BLASTN+186000.gbk
3368698*39525926562Island text2.663739.574230.7985Neighbours326BLASTN+IslandViewer 368698.gbk
4798191*82159923409Island text1.8254135.582727.2118Neighbours21BLASTN+798191.gbk
5853500*87209918600Island text1.6117232.177250.7228Neighbours326BLASTN+853500.gbk
688913290727818147Island text1.8036732.225812.7665Neighbours21BLASTN+IslandViewer 889132.gbk
796677998463017852Island text1.6640831.125421.4155Neighbours21BLASTN+966779.gbk
8995480102170726228Island text1.845134.375421.8614Neighbours21BLASTN+995480.gbk
91071773*109094919177Island text1.5045133.344527.9571Neighbours326BLASTN+1071773.gbk
101136589115922122633Island text2.2198332.439827.9869Neighbours21BLASTN+IslandViewer 1136589.gbk
111220869126728746419Island text1.611734.321135.9326Neighbours21BLASTN+IslandViewer 1220869.gbk
121292213*132033528123Island text1.6605231.812414.5572Neighbours326BLASTN+1292213.gbk
131485656*150613920484Island text1.6649834.733724.7777Neighbours326BLASTN+1485656.gbk
141512546*153687124326Island text1.4648734.162229.2179Neighbours326BLASTN+IslandViewer 1512546.gbk
151537183*156048823306Island text1.6154334.040653.1307Neighbours326BLASTN+1537183.gbk
161736500*175580519306Island text1.6817731.914249.3584Neighbours326BLASTN+1736500.gbk
171832144185459922456Island text1.9654733.50524.9994Neighbours21BLASTN+IslandViewer 1832144.gbk
181877764191259934836Island text2.5131337.47224.5598Neighbours21BLASTN+1877764.gbk
192010000*203212022121Island text1.468132.563252.2331Neighbours326BLASTN+2010000.gbk
202036340205433517996Island text1.6504132.079921.8602Neighbours326BLASTN+IslandViewer 2036340.gbk