Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014652: Caldicellulosiruptor hydrothermalis 108 chromosome, complete

NCBI: NC_014652

Host Lineage: Caldicellulosiruptor hydrothermalis; Caldicellulosiruptor; Thermoanaerobacterales Family III; Thermoanaerobacterales; Firmicutes; Bacteria

General Information: Country: Russia; Environment: Hot spring; Isolation: Terrestrial neutral geothermal spring; Temp: Hyperthermophile; Temp: 79C. Caldicellulosiruptor hydrothermalis is a thermphilic gram positive bacterium. This organism produces a thermostable cellulase which may have industrial uses.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
116334718672523379Island text1.6187221.333938.403Neighbours21BLASTN+163347.gbk
2325109*34771122603Island text3.4315733.797548.87Neighbours21BLASTN+325109.gbk
3379833*40983830006Island text1.8996425.78936.1387Neighbours21BLASTNIslandViewer 379833.gbk
4420457*47059950143Island text1.8035923.526637.3843Neighbours21BLASTN+IslandViewer 420457.gbk
562843565489426460Island text1.6998222.352336.4478Neighbours21BLASTN+628435.gbk
6666227*68697120745Island text1.6171523.013141.3159Neighbours21BLASTN666227.gbk
7757381*77646419084Island text1.5929822.747442.1062Neighbours21BLASTN+757381.gbk
8801653*83252530873Island text1.9218823.45640.4347Neighbours21BLASTN+801653.gbk
91032711*107395141241Island text2.4545127.488645.1816Neighbours21BLASTN+1032711.gbk
101091610111461223003Island text3.0322622.701824.1503Neighbours21BLASTNIslandViewer 1091610.gbk
111651671167453522865Island text1.5673622.63529.3763Neighbours21BLASTN+1651671.gbk
121758787*178282424038Island text1.5336722.273239.6699Neighbours21BLASTN1758787.gbk
131803000182167718678Island text2.6529122.835627.6465Neighbours21BLASTN+IslandViewer 1803000.gbk
141898969*192157222604Island text1.6964424.100839.1237Neighbours21BLASTN1898969.gbk
152323598*234611822521Island text2.6915234.081552.0635Neighbours21BLASTN+2323598.gbk