Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014500: Dickeya dadantii 3937 chromosome, complete genome

NCBI: NC_014500

Host Lineage: Dickeya dadantii; Dickeya; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Strain 3937 is a wild-type strain isolated from Saintpaulia ionantha plants in the early 1980s. Dickeya dadantii formerly (Erwinia chrysanthemi) is a phytopathogenic bacterium that causes soft rot diseases on many crops. This organism produces pectinolytic enzymes which break down plant cell walls allowing for the spread of disease.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1177824*20069822875Island text1.5095231.310833.981Neighbours41BLASTN+177824.gbk
2443874*46959925726Island text2.7316243.498130.7134Neighbours41BLASTN+IslandViewer 443874.gbk
356486459190627043Island text1.522434.794533.1161Neighbours41BLASTN+IslandViewer 564864.gbk
484249388059638104Island text2.5894338.283334.5263Neighbours41BLASTN+IslandViewer 842493.gbk
589413693546441329Island text2.1489137.858627.977Neighbours51BLASTN+IslandViewer 894136.gbk
61066911*109884731937Island text4.2946146.735421.952Neighbours41BLASTN+1066911.gbk
71491660151533923680Island text1.61630.402133.4338Neighbours41BLASTN+IslandViewer 1491660.gbk
81646854*167518028327Island text2.4353837.951325.7032Neighbours51BLASTN+1646854.gbk
91862000*191726855269Island text2.1846536.444824.3659Neighbours41BLASTN+IslandViewer 1862000.gbk
102019113204779528683Island text2.9468542.632523.928Neighbours41BLASTN+IslandViewer 2019113.gbk
112402881243009627216Island text2.3154237.542926.5329Neighbours41BLASTN+2402881.gbk
122479814*250755827745Island text1.8279933.139923.8864Neighbours41BLASTN2479814.gbk
132525880254587920000Island text1.6467430.314728.6929Neighbours51BLASTNIslandViewer 2525880.gbk
142589089*260812419036Island text1.577734.281822.7575Neighbours41BLASTN+2589089.gbk
152616423264017523753Island text1.6493229.970229.2727Neighbours51BLASTN+2616423.gbk
162688095271328625192Island text2.1234837.048926.7264Neighbours41BLASTN+IslandViewer 2688095.gbk
172934232*295717222941Island text1.7149137.528631.111Neighbours51BLASTN+2934232.gbk
183023762*306170037939Island text1.5487932.24524.349Neighbours41BLASTN+IslandViewer 3023762.gbk
193071764309400622243Island text1.4963330.350235.4124Neighbours41BLASTN3071764.gbk
203097362*318793090569Island text2.017335.349227.7382Neighbours41BLASTN+IslandViewer 3097362.gbk
213175283321401838736Island text3.1601944.458825.967Neighbours51BLASTNIslandViewer 3175283.gbk
223519722353859918878Island text1.7297732.16418.3112Neighbours51BLASTN+3519722.gbk
233744705*376630221598Island text1.8189934.121428.293Neighbours41BLASTN+3744705.gbk
244049384407390824525Island text2.3963442.717723.7061Neighbours41BLASTN+4049384.gbk
254257145*428370126557Island text2.373938.476825.749Neighbours41BLASTN+4257145.gbk
264691915472059528681Island text3.5303647.158621.5212Neighbours41BLASTN+IslandViewer 4691915.gbk
274883794490328419491Island text1.6448930.192126.5258Neighbours41BLASTN+IslandViewer 4883794.gbk