Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014216: Desulfurivibrio alkaliphilus AHT2 chromosome, complete genome

NCBI: NC_014216

Host Lineage: Desulfurivibrio alkaliphilus; Desulfurivibrio; Desulfobulbaceae; Desulfobacterales; Proteobacteria; Bacteria

General Information: Isolation: Sediments from a highly alkaline saline; Country: Egypt; Temp: Mesophile. Desulfurivibrio alkaliphilus was isolated from sediment from a highly alkaline saline soda lake in Egypt. This organism is alkaliphilic and salt-tolerant.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1608740*62946620727Island text1.6767523.385834.651Neighbours11BLASTN+608740.gbk
21061265*108505223788Island text1.8051626.959735.6885Neighbours33BLASTN1061265.gbk
31197704*122880631103Island text2.3363433.429133.8915Neighbours11BLASTN+IslandViewer 1197704.gbk
41787000180780520806Island text1.5842431.458733.5161Neighbours33BLASTN1787000.gbk
52027017204759220576Island text1.4735224.811542.3925Neighbours11BLASTN2027017.gbk
62054860208268227823Island text2.1246433.639730.2899Neighbours11BLASTN2054860.gbk
72097500212022822729Island text1.7624132.061441.0088Neighbours33BLASTN2097500.gbk
82127370215539428025Island text2.1349335.869427.2177Neighbours316BLASTN+IslandViewer 2127370.gbk
92334568235571921152Island text1.5508628.922527.5632Neighbours33BLASTN+IslandViewer 2334568.gbk
102538500*256387025371Island text1.9262233.224731.9515Neighbours11BLASTN+IslandViewer 2538500.gbk
112860342288514124800Island text2.4360736.568127.6909Neighbours11BLASTN+IslandViewer 2860342.gbk
123003347302346820122Island text1.4941125.437724.6437Neighbours33BLASTN+3003347.gbk