Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014010: Candidatus Puniceispirillum marinum IMCC1322 chromosome, complete

NCBI: NC_014010

Host Lineage: Puniceispirillum marinum; Puniceispirillum; ; ; Proteobacteria; Bacteria

General Information: Puniceispirillum marinum (strain IMCC1322) is a Gram-negative bacterium isolated from a surface seawater sample from the Western Pacific Ocean Margin (East Sea of Korea). This organism has no sequenced representatives but as a member of the SAR116 clade it is a cosmopolitan marine bacterioplanktonic assemblage. The organism contains putative CO-utilizing enzymes and has proteorhodopsin for a light-driven proton pump.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1175500*20109925600Island text1.5990839.508127.817Neighbours21BLASTN+IslandViewer 175500.gbk
238732140919621876Island text1.564940.249649.3346IslandViewer 387321.gbk
3484000*50804924050Island text1.4652131.01948.794Neighbours58BLASTN+484000.gbk
41020488106630345816Island text2.1915139.107325.8384Neighbours41BLASTNIslandViewer 1020488.gbk
51392536*145077158236Island text1.7950240.454519.5626Neighbours21BLASTN+IslandViewer 1392536.gbk
61489910151209922190Island text1.5679738.026624.5601BLASTN+IslandViewer 1489910.gbk
71850500191363163132Island text1.8762736.928319.1691Neighbours41BLASTN+IslandViewer 1850500.gbk
82689682*271141921738Island text1.6755934.687722.0855Neighbours58BLASTN+IslandViewer 2689682.gbk