Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014006: Sphingobium japonicum UT26S chromosome 1, complete genome

NCBI: NC_014006

Host Lineage: Sphingobium japonicum; Sphingobium; Sphingomonadaceae; Sphingomonadales; Proteobacteria; Bacteria

General Information: Sphingobium japonicum (strain NBRC 101211 / UT26S) is a yellow-pigmented, non-motile, aerobic, hexachlorocyclohexane (HCH)-degrading Gram-negative bacterium isolated from a dumpsite in the vicinity of an industry that has been producing lindane. HCH has been used extensively as insect control agents in the health and agriculture fields. Sphingobium japonicum, formerly Sphingomonas paucimobilis, is able to degrade hexachlorocyclohexane which has been used extensively as insect control agents in the health and agriculture fields.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
163000*8535422355Island text2.279123.656422.5315Neighbours11BLASTN+63000.gbk
2344331*36701722687Island text1.9686423.43620.4993Neighbours11BLASTN+IslandViewer 344331.gbk
3611592*64143829847Island text2.3002830.189326.5443Neighbours11BLASTN+IslandViewer 611592.gbk
4850763*90963758875Island text3.400540.999733.8103Neighbours11BLASTN+IslandViewer 850763.gbk
5924417*94759923183Island text1.8454224.900724.2985Neighbours11BLASTNIslandViewer 924417.gbk
6994500*101909924600Island text1.8353424.769320.1381Neighbours11BLASTN+IslandViewer 994500.gbk
71204500122366719168Island text1.9283720.595235.388Neighbours11BLASTN1204500.gbk
81365207139275727551Island text1.5575820.896216.7682Neighbours11BLASTN+IslandViewer 1365207.gbk
91862000188907327074Island text1.5148921.960125.1431Neighbours11BLASTN+1862000.gbk
102626544264517818635Island text1.5078323.413217.563Neighbours11BLASTN+2626544.gbk
112932959*295601723059Island text1.6078420.958415.8767Neighbours11BLASTN+IslandViewer 2932959.gbk
122999500*304199842499Island text2.1564528.335324.1242Neighbours11BLASTN+IslandViewer 2999500.gbk
133124818*317034545528Island text2.0453229.431430.2076Neighbours11BLASTN+IslandViewer 3124818.gbk