Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_013928: Streptococcus mutans NN2025, complete genome

NCBI: NC_013928

Host Lineage: Streptococcus mutans; Streptococcus; Streptococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This strain is a clinical serotype c strain isolated in Japan in 2002. Streptococci are Gram-positive, nonmotile, nonsporeforming, catalase-negative cocci that occur in pairs or chains. Members of this genus vary widely in pathogenic potential. Most streptococci are facultative anaerobes, and some are obligate anaerobes. Streptococcus mutans was first isolated in 1924 from human carious (cavities) lesions and is the main cause of tooth decay. This organism thrives in a bacterial community known as a dental plaque which forms on the surface of teeth. This organism has also been implicated in cases of infective endocarditis.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
19494*5022340730Island text2.2892327.176738.3393Neighbours21BLASTN9494.gbk
2174500*19539120892Island text2.6138925.171938.402Neighbours21BLASTN+174500.gbk
3370893*38909918207Island text1.9794423.771541.9298Neighbours21BLASTN+370893.gbk
4395028*42504130014Island text3.3579329.808444.0424Neighbours21BLASTN395028.gbk
5797714*82009922386Island text1.6317619.327632.105Neighbours21BLASTN797714.gbk
61348618*136659917982Island text1.682619.43728.956Neighbours21BLASTN+1348618.gbk
71828099*184889220794Island text2.4714629.250136.8882Neighbours21BLASTN+1828099.gbk