Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013893: Staphylococcus lugdunensis HKU09-01 chromosome, complete genome

NCBI: NC_013893

Host Lineage: Staphylococcus lugdunensis; Staphylococcus; Staphylococcaceae; Bacillales; Firmicutes; Bacteria

General Information: Complete genome sequencing of Staphylococcus lugdunensis strain HKU09-01 isolated from a patient suffering from skin and soft tissue infection. Staphylococcus lugdunensis is known to be a pathogenic member of the coagulase-negative staphylococci, causing skin and soft tissue infections, catheter-related bacteremia, native valve endocardititis and osteomyelitis.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1546887972925042Island text1.8312620.780632.6593Neighbours21BLASTN+IslandViewer 54688.gbk
235984238219422353Island text1.9146224.274240.1026Neighbours325BLASTN+359842.gbk
351122253420922988Island text1.628225.363339.5671Neighbours21BLASTN+IslandViewer 511222.gbk
4830282*85359923318Island text1.6940824.138936.0835Neighbours21BLASTN+830282.gbk
51723939174613522197Island text1.5696818.798631.7761Neighbours21BLASTN+1723939.gbk
62310495233660526111Island text1.9287920.017639.5785Neighbours21BLASTN+IslandViewer 2310495.gbk
72373730*239918425455Island text1.7153230.856846.3964Neighbours21BLASTN2373730.gbk
82406893*242622019328Island text1.5173622.683634.8256Neighbours21BLASTN2406893.gbk