Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013517: Sebaldella termitidis ATCC 33386, complete genome

NCBI: NC_013517

Host Lineage: Sebaldella termitidis; Sebaldella; Leptotrichiaceae; Fusobacteriales; Fusobacteria; Bacteria

General Information: Isolation: Termite intestine; Temp: Mesophile; Habitat: Gut, Host. Sebaldella termitidis, formerly Bacteroides termitidis was originally isolated from the termite intestine. This organism is able to degrade uric acid and may play a role in providing nitrogen to the termite host.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1104480*12509920620Island text2.3957324.147141.7854Neighbours21BLASTN+104480.gbk
230041132459924189Island text2.1725924.417645.8001Neighbours21BLASTN+300411.gbk
336623439073524502Island text1.5892824.952945.3024Neighbours21BLASTN+366234.gbk
446142547909917675Island text3.1844822.574241.1317Neighbours21BLASTN461425.gbk
548353150609922569Island text3.7573522.56229.0413NeighboursBLASTN483531.gbk
659994962019020242Island text1.6125724.189442.7417Neighbours21BLASTN+599949.gbk
7773280*80118127902Island text1.8461927.208347.9607Neighbours21BLASTN+773280.gbk
882510084990924810Island text1.5798622.413143.97Neighbours21BLASTN+825100.gbk
91014000103410520106Island text1.5129726.675645.4124Neighbours37BLASTN+1014000.gbk
101038000*106286724868Island text1.5798123.972543.7995Neighbours21BLASTN+1038000.gbk
111055854*1161670105817Island text2.2231224.812143.195Neighbours37BLASTN+1055854.gbk
121249466*126960520140Island text2.1120521.628838.5613Neighbours21BLASTN+1249466.gbk
131480368150126620899Island text3.6921523.166342.496Neighbours21BLASTN+1480368.gbk
141501276152124519970Island text2.2747323.940637.8832Neighbours21+1501276.gbk
151529765155678327019Island text1.5527222.762641.1804Neighbours37BLASTN+1529765.gbk
161823926184674922824Island text1.4471824.598740.1815Neighbours21BLASTN+1823926.gbk
171849912187994330032Island text1.6119722.920740.4921Neighbours21BLASTN+1849912.gbk
181916020193762321604Island text2.0084523.397440.8089Neighbours21BLASTN+1916020.gbk
192055071207893523865Island text1.642622.525539.1156Neighbours21BLASTN+2055071.gbk
202413373243180618434Island text1.5237424.398142.3255Neighbours21BLASTN+2413373.gbk
212437574*248761650043Island text3.4314522.764843.3758Neighbours21BLASTN+2437574.gbk
222607043*262678719745Island text1.5434323.612342.7321Neighbours21BLASTN+2607043.gbk
232633574*265613222559Island text1.5687223.802341.893Neighbours21BLASTN+2633574.gbk
242744617276921024594Island text4.6122423.280325.4785Neighbours21BLASTN+2744617.gbk
252815482283769622215Island text1.7151423.018342.7508Neighbours37BLASTN+2815482.gbk
262909798*293751827721Island text2.9154921.388641.4606Neighbours21BLASTN+2909798.gbk
273082279*310209919821Island text3.5869622.768739.3196Neighbours21BLASTN3082279.gbk
283385166340616621001Island text1.720922.40640.3033Neighbours21BLASTN+3385166.gbk
293453500347359920100Island text2.3160424.293945.6511Neighbours21BLASTN+3453500.gbk
303624591364309918509Island text1.636622.796140.5652Neighbours21BLASTN+3624591.gbk
313846747386642319677Island text2.0933422.039236.0336Neighbours21BLASTN+3846747.gbk
323948500396859920100Island text1.5694124.822743.9721Neighbours21BLASTN+3948500.gbk
333997448401859921152Island text3.0443223.023642.4047Neighbours21BLASTN3997448.gbk
344117666415939441729Island text3.1769322.481940.9789Neighbours21BLASTN+4117666.gbk
354208939*429108782149Island text3.1249524.002344.2222Neighbours21BLASTN+4208939.gbk