Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_012811: Methylobacterium extorquens AM1 megaplasmid, complete sequence

NCBI: NC_012811

Host Lineage: Methylobacterium extorquens; Methylobacterium; Methylobacteriaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: First isolated in 1960 in Oxford, England, as an airborne contaminant growing on methylamine. This strain can grow on methylamine or methanol, but not methane. This organism is capable of growth on one-carbon compounds such as methanol. Methanol is oxidized to formaldehyde which is then used metabolically to generate either energy or biomass. These bacteria are commonly found in the environment, especially associated with plants which produce methanol when metabolizing pectin during cell wall synthesis. At least 25 genes are required for this complex process of converting methanol to formaldehyde and this specialized metabolic pathway is of great interest.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112967229672Island text1.7977515.666315.553Neighbours11BLASTN1.gbk
2628678623923373Island text2.0920717.296913.6973Neighbours11BLASTN62867.gbk
3139498*16287223375Island text1.6098915.764811.4508Neighbours11BLASTN+139498.gbk
422754127111643576Island text2.3272718.47420.0303Neighbours11BLASTN227541.gbk
531730834221324906Island text1.4649815.631112.7969Neighbours11BLASTN317308.gbk
641077643723726462Island text1.9590416.650518.8246Neighbours11BLASTN+410776.gbk
7959725*98359923875Island text1.8856518.182916.6414Neighbours11BLASTN+959725.gbk
81105395112959924205Island text1.635618.544212.8148Neighbours11BLASTN1105395.gbk
91138897115709918203Island text1.5632715.524717.0605Neighbours11BLASTN+1138897.gbk