Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012781: Eubacterium rectale ATCC 33656, complete genome

NCBI: NC_012781

Host Lineage: Eubacterium rectale; Eubacterium; Eubacteriaceae; Clostridiales; Firmicutes; Bacteria

General Information: Eubacterium rectale ATCC 33656 was isolated from human feces. This genus has been isolated as normal flora from feces, rumen, and periodontal tissue. Eubacterium spp. are thought to play a beneficial role in maintaining the normal ecology of the large intestine, in part by producing chemicals like butyric acid which act to inhibit the growth of other bacteria. These organisms are occasionally isolated from wounds and abscesses and may be an opportunistic pathogen. This genus has also been isolated from sewage and soil.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
14065*2459920535Island text2.4881134.993949.2006Neighbours37BLASTN4065.gbk
2302387*32099418608Island text2.7169131.651352.3876Neighbours37BLASTN302387.gbk
3379200*39812018921Island text1.8197531.795247.6124Neighbours37BLASTN+IslandViewer 379200.gbk
453567455359917926Island text3.7232130.675534.0297Neighbours21BLASTNIslandViewer 535674.gbk
562976164846518705Island text1.9256631.906646.1201Neighbours37BLASTN629761.gbk
6700226*73549235267Island text1.9966241.233338.8016Neighbours31BLASTN+IslandViewer 700226.gbk
7751757*77413422378Island text3.5597536.764361.2377Neighbours37BLASTN751757.gbk
81968827200279833972Island text2.1391541.300254.7647Neighbours37BLASTNIslandViewer 1968827.gbk
92148478*217363325156Island text2.4731933.584655.6706Neighbours37BLASTN+2148478.gbk
102552723*258830435582Island text2.0257940.779339.3204Neighbours31BLASTN+2552723.gbk
112608840263233023491Island text2.1196330.760636.929Neighbours21BLASTN+2608840.gbk
122802000*282417722178Island text1.5723431.32642.8676Neighbours37BLASTN2802000.gbk
133087467*310673119265Island text1.9639733.952552.8718Neighbours37BLASTN3087467.gbk
143315614335472839115Island text1.6196531.889347.8224Neighbours37BLASTN+IslandViewer 3315614.gbk