Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012587: Rhizobium sp. NGR234, complete genome

NCBI: NC_012587

Host Lineage: Sinorhizobium fredii; Sinorhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This organism, much like other Rhizobia, forms a symbiotic relationship with a leguminous plant, such as soybean, cowpea or pigeon pea. Expression of nodulation genes results in production of a nodulation signal which the plant cell recognizes inducing root nodule formation. The plant cell provides carbon compounds for the bacterium to grow on.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112884515159922755Island text1.5441524.125619.6304Neighbours11BLASTN+IslandViewer 128845.gbk
271312473838525262Island text1.6876525.666722.8164Neighbours11BLASTN+IslandViewer 713124.gbk
31181004*120298621983Island text1.549621.927716.9083Neighbours11BLASTN+IslandViewer 1181004.gbk
41203103*122551622414Island text1.6227126.252426.9007Neighbours11BLASTNIslandViewer 1203103.gbk
52298324232252924206Island text1.4401421.023813.0467Neighbours11BLASTN+IslandViewer 2298324.gbk
62326000*234764221643Island text1.6303824.718316.7655Neighbours11BLASTN+IslandViewer 2326000.gbk
72744731*277030625576Island text2.3693827.185935.2039Neighbours11BLASTN2744731.gbk
83177583*320090723325Island text2.151425.817535.5131Neighbours11BLASTN3177583.gbk
93613162*363761324452Island text2.1198627.899436.5252Neighbours11BLASTN+3613162.gbk