Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011979: Geobacter sp. FRC-32, complete genome

NCBI: NC_011979

Host Lineage: Geobacter daltonii; Geobacter; Geobacteraceae; Desulfuromonadales; Proteobacteria; Bacteria

General Information: This organism is able to reduce uranium and may be useful for in situ bioremediation of uranium. An iron(III)-reducing bacterium isolated from the uranium-contaminated subsurface of the U.S. Department of Energy NABIR Field Research Center (FRC), Oak Ridge, Tennessee, USA. Several recent studies have verified using cultivation-independent methods that the Geobacteraceae are predominant in subsurface environments where dissimilatory metal reduction is important to the remediation of uranium and other contaminants.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
153786256190524044Island text1.4598735.627437.9279Neighbours33BLASTN+537862.gbk
258987460843018557Island text1.6567531.189230.5397Neighbours33BLASTN589874.gbk
364651867713630619Island text1.812236.071325.9794Neighbours33BLASTN+IslandViewer 646518.gbk
477367380051726845Island text2.1554242.25922.2353Neighbours11BLASTN+IslandViewer 773673.gbk
51062457*108101318557Island text1.5032734.767130.5244Neighbours33BLASTNIslandViewer 1062457.gbk
61128986115470925724Island text1.8585935.490652.2171Neighbours375BLASTN1128986.gbk
71590432*162467634245Island text3.0500945.063623.203Neighbours23BLASTN+1590432.gbk
81683964170761223649Island text1.6161232.152828.3469Neighbours33BLASTN1683964.gbk
92352961*238357030610Island text2.6554343.546427.5091Neighbours23BLASTN2352961.gbk
102641500*267267531176Island text3.6384947.298924.9526Neighbours33BLASTN+IslandViewer 2641500.gbk
112892119*291613624018Island text1.5964633.949322.3954Neighbours32BLASTN2892119.gbk
122969969299816528197Island text1.6283435.307535.7961Neighbours11BLASTN2969969.gbk
133045952*306914123190Island text1.5039432.149817.0605Neighbours33BLASTN+3045952.gbk
143070110309419024081Island text1.9073234.152829.2411Neighbours33BLASTN+3070110.gbk
153112911313409921189Island text1.6768634.995129.7478NeighboursBLASTN3112911.gbk
163341099336982328725Island text2.136741.273922.5404Neighbours23BLASTN3341099.gbk
173409610343709927490Island text2.8274245.166927.6514Neighbours375BLASTN+IslandViewer 3409610.gbk
183495432351709921668Island text1.4666532.028233.646Neighbours33BLASTN3495432.gbk
193712845*373796825124Island text1.4311634.253424.3391Neighbours33BLASTN+3712845.gbk
203880488389885218365Island text1.5437131.02532.9212Neighbours33BLASTN3880488.gbk
214062000408530423305Island text2.1058843.339649.2843Neighbours375BLASTN4062000.gbk
224293859*431999926141Island text1.7743931.835724.6559Neighbours33BLASTN4293859.gbk