Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_011958: Rhodobacter sphaeroides KD131 chromosome 2, complete genome

NCBI: NC_011958

Host Lineage: Rhodobacter sphaeroides; Rhodobacter; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: Bacteria belonging to the Rhodobacter group are metabolically versatile as they are able to grow using photosynthesis, chemosynthesis, and usually can grow under both anaerobic and aerobic conditions. The most extensively studied bacteria with regards to its photosynthetic capabilities which includes the structure, function and regulation of its photosynthetic membranes, its mechanisms of CO2 and nitrogen fixation, cytochrome diversity and its electron transport systems. It can grow aerobically and anaerobically in the light and anaerobically in the dark. It produces an intracytoplasmic membrane system consisting of membrane invaginations where the light harvesting complexes (LH1 and LH2) and the reaction center are synthesized. Furthermore, it has the ability to detoxify metal oxides and oxyanions and hence has a role in bioremediation.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
153426*7609922674Island text4.1473625.237129.8004Neighbours11BLASTN+53426.gbk
273575578945053696Island text1.8204818.419916.6493Neighbours11BLASTN+IslandViewer 735755.gbk
392378995236428576Island text4.0666625.69817.6087Neighbours11BLASTN+IslandViewer 923789.gbk
4976500101879142292Island text1.8658320.138620.7971Neighbours11BLASTN+IslandViewer 976500.gbk
51031592*107050538914Island text3.3202225.108921.7782Neighbours11BLASTN+IslandViewer 1031592.gbk
61121387*114659925213Island text3.5524122.404322.0778Neighbours11BLASTN+1121387.gbk