Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011283: Klebsiella pneumoniae 342 chromosome, complete genome

NCBI: NC_011283

Host Lineage: Klebsiella pneumoniae; Klebsiella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Klebsiella pneumoniae 342 was isolated from the stem tissue of Zea mays. This strain fixes atmospheric nitrogen and may be able to provide nitrogen, in the form of ammonia, to plant cells. This organism is the most medically important organism within the genus Klebsiella. It is an environmental organism found in water, soil, and on the surface of plants. Several strains have been isolated from plant tissues and are nitrogen-fixing endophytes that may be a source of nitrogen for the plant. Other strains can become opportunistic pathogens which infect humans, and typically causes hospital-acquired infections in immunocompromised patients. Major sites of infection include the lungs, where it causes a type of pneumonia, and urinary tract infections. Klebsiella can also enter the bloodstream (bacterimia) and cause sepsis. The pathogen can also infect animals and cause inflammation of the uterus in horses as well as more generalized infections in other mammals. This organism expresses numerous pathogenicity factors, including multiple adhesins, capsular polysaccharide, siderophores, and lipopolysaccharide for the evasion of host defenses. The multiple antibiotic resistance genes carried on the chromosome inhibit efforts to clear the organism from infected patients via antibiotic use.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1105245*12796422720Island text1.7827434.329729.4474Neighbours51BLASTN+IslandViewer 105245.gbk
2785973*81142525453Island text1.7294735.408945.3129Neighbours41BLASTN+IslandViewer 785973.gbk
381997084249422525Island text1.9166137.388735.1786Neighbours51BLASTN+819970.gbk
494259496588323290Island text1.3339933.347522.7068Neighbours51BLASTNIslandViewer 942594.gbk
51178500119609917600Island text1.9395738.49431.8736BLASTNIslandViewer 1178500.gbk
61307173133042323251Island text1.9722630.79428.0789Neighbours41BLASTN+IslandViewer 1307173.gbk
71690193173642246230Island text1.8200133.812350.6436Neighbours41BLASTN+IslandViewer 1690193.gbk
81811000*189189980900Island text1.5092133.657616.6707Neighbours51BLASTN+IslandViewer 1811000.gbk
91901229*192413322905Island text6.0299249.574423.3694Neighbours51BLASTN+IslandViewer 1901229.gbk
102103500*212794724448Island text2.3781142.4124.3067Neighbours51BLASTN+2103500.gbk
112185462*221355928098Island text1.7674139.226724.7259Neighbours51BLASTN+IslandViewer 2185462.gbk
122323687234668322997Island text2.4727344.697129.2136Neighbours41BLASTN+IslandViewer 2323687.gbk
132627050266010033051Island text2.5147745.124919.2551Neighbours41BLASTN+IslandViewer 2627050.gbk
142684046271492030875Island text1.3657936.758319.771Neighbours51BLASTN+IslandViewer 2684046.gbk
152836000292172985730Island text2.4434940.726220.6039Neighbours51BLASTN+IslandViewer 2836000.gbk
163177350320259025241Island text1.8905940.593326.3805Neighbours41BLASTN+3177350.gbk
173379181341378134601Island text2.2127639.955823.9981Neighbours41BLASTN+IslandViewer 3379181.gbk
184170369420765037282Island text2.0098240.229826.8851Neighbours52BLASTN+IslandViewer 4170369.gbk
194212000423033018331Island text2.6138441.518929.0265Neighbours41BLASTN+IslandViewer 4212000.gbk
204438500*448860850109Island text1.8397137.846334.9038Neighbours41BLASTN+IslandViewer 4438500.gbk
214767269*479092323655Island text1.5069531.772932.775Neighbours41BLASTN+4767269.gbk
224966471500517738707Island text5.1148553.73521.6526Neighbours41BLASTN+IslandViewer 4966471.gbk
235011497503446422968Island text1.5615731.617845.2735Neighbours41BLASTN+IslandViewer 5011497.gbk
245170683*519733026648Island text1.4635534.004128.5114Neighbours51BLASTN+IslandViewer 5170683.gbk