Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_011071: Stenotrophomonas maltophilia R551-3, complete genome

NCBI: NC_011071

Host Lineage: Stenotrophomonas maltophilia; Stenotrophomonas; Xanthomonadaceae; Xanthomonadales; Proteobacteria; Bacteria

General Information: Stenotrophomonas maltophilia R551-3 was isolated from the poplar Populus trichocarpa x deltoides cv. "Hoogvorst" and is the second most common endophytic bacteria in poplar. Endophytic bacteria have been shown to increase plant growth or health but providing growth factors or nutrients and in aiding the degradation of toxic compounds. This species is an uncommon but serious source of infection in patients with breathing tubes such as endotracheal or tracheostomy tubes, or with chronically indwelling urinary catheters. Although the organism can colonize the devices without causing an infection, under certain conditions it can cause pneumonia, urinary tract infections, or an infection of the blood. This organism can also cause infection in immunocompromised patients. It has resistance to many commonly used antibiotics and therefore is often difficult to eradicate. Most strains are resistant to co-trimoxazole.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1108423591025069Island text1.7575924.357325.0278Neighbours11BLASTN+IslandViewer 10842.gbk
242920445640627203Island text2.004521.107419.2704Neighbours11BLASTN+IslandViewer 429204.gbk
357234659222019875Island text1.5051218.439923.8214Neighbours11BLASTN+IslandViewer 572346.gbk
41178423120226523843Island text1.7201820.767424.6027Neighbours11BLASTN1178423.gbk
51773847179662522779Island text1.8035522.965817.9742Neighbours11BLASTN+IslandViewer 1773847.gbk
61877500190261425115Island text2.561927.650331.244Neighbours11BLASTNIslandViewer 1877500.gbk
72207385223164424260Island text1.9851721.720217.1489Neighbours11BLASTN+IslandViewer 2207385.gbk
82733438275792624489Island text1.9845227.055424.2431Neighbours11BLASTNIslandViewer 2733438.gbk
92770229280412433896Island text2.3807424.9124.1548Neighbours11BLASTN+IslandViewer 2770229.gbk
103544450356909924650Island text1.8868324.017224.414Neighbours11BLASTNIslandViewer 3544450.gbk
114000620*403191731298Island text2.7129528.559723.1318Neighbours11BLASTN+IslandViewer 4000620.gbk
124235830426191326084Island text2.1114123.455327.4889Neighbours11BLASTNIslandViewer 4235830.gbk